RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PKIGQ9Y2B9 76 aa9.65□□□□□ -0.86
CCDC88C-202ENST00000334448 HYDINQ4G0P3 5121 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 IGKV2-28A0A075B6P5 120 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 LOC107984640A0A0U1RRK4 108 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 C9orf118A6NHY6 69 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 IGKV2D-28P01615 120 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 FRAS1Q86XX4 4008 aa9.64□□□□□ -0.87
CCDC88C-202ENST00000334448 TRAV13-2A0A0B4J235 113 aa9.63□□□□□ -0.87
CCDC88C-202ENST00000334448 C9orf163Q8N9P6 203 aa9.63□□□□□ -0.87
CCDC88C-202ENST00000334448 PLA2G2DQ9UNK4 145 aa9.63□□□□□ -0.87
CCDC88C-202ENST00000334448 DNAH11Q96DT5 4516 aa9.62□□□□□ -0.87
CCDC88C-202ENST00000334448 TRBV10-2A0A0K0K1G8 114 aa9.62□□□□□ -0.87
CCDC88C-202ENST00000334448 RYR2Q92736 4967 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 RTL8CO15255 209 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 TSPAN13O95857 204 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 C9orf129Q5T035 196 aaKnown RBP9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 LINC00337Q8N6G1 96 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 Q8NDZ9 215 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 XAGE1AQ9HD64 81 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 PGPEP1Q9NXJ5 209 aa9.61□□□□□ -0.87
CCDC88C-202ENST00000334448 FAT2Q9NYQ8 4349 aa9.6□□□□□ -0.87
CCDC88C-202ENST00000334448 VPREB1P12018 145 aa9.6□□□□□ -0.87
CCDC88C-202ENST00000334448 HECTD4Q9Y4D8 3996 aa9.6□□□□□ -0.87
CCDC88C-202ENST00000334448 IGLV5-37A0A075B6J1 123 aa9.59□□□□□ -0.87
CCDC88C-202ENST00000334448 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-202ENST00000334448 C16orf90A8MZG2 172 aa9.59□□□□□ -0.87
CCDC88C-202ENST00000334448 RPL13AP40429 203 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-202ENST00000334448 RPL18AQ02543 176 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-202ENST00000334448 GAGE2EQ4V326 116 aa9.58□□□□□ -0.88
CCDC88C-202ENST00000334448 GAGE2DQ9UEU5 116 aa9.58□□□□□ -0.88
CCDC88C-202ENST00000334448 A0A1W2PPM0 123 aa9.57□□□□□ -0.88
CCDC88C-202ENST00000334448 H3BUT2 72 aa9.57□□□□□ -0.88
CCDC88C-202ENST00000334448 TNP2Q05952 138 aa9.56□□□□□ -0.88
CCDC88C-202ENST00000334448 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
CCDC88C-202ENST00000334448 A0A1B0GV90 55 aa9.55□□□□□ -0.88
CCDC88C-202ENST00000334448 IGLV6-57P01721 117 aa9.55□□□□□ -0.88
CCDC88C-202ENST00000334448 TMEM126AQ9H061 195 aa9.55□□□□□ -0.88
CCDC88C-202ENST00000334448 KMT2CQ8NEZ4 4911 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 A0A096LNI7 61 aa9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 M0R378 163 aa9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 RPL28P46779 137 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 GAGE2BQ13066 116 aa9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 LYRM7Q5U5X0 104 aa9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 LINC00474Q9P2X8 69 aa9.54□□□□□ -0.88
CCDC88C-202ENST00000334448 DNAH5Q8TE73 4624 aa9.53□□□□□ -0.88
CCDC88C-202ENST00000334448 FABP2P12104 132 aa9.53□□□□□ -0.88
CCDC88C-202ENST00000334448 PRR3P79522 188 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-202ENST00000334448 NCR3O14931 201 aa9.52□□□□□ -0.89
CCDC88C-202ENST00000334448 Q1RN00 199 aa9.52□□□□□ -0.89
CCDC88C-202ENST00000334448 SERTAD4-AS1Q5TG53 156 aa9.52□□□□□ -0.89
CCDC88C-202ENST00000334448 NAA38Q9BRA0 125 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-202ENST00000334448 EPM2AB3EWF7 344 aa9.51□□□□□ -0.89
CCDC88C-202ENST00000334448 H7C2G1 150 aa9.51□□□□□ -0.89
CCDC88C-202ENST00000334448 TRIAP1O43715 76 aa9.51□□□□□ -0.89
CCDC88C-202ENST00000334448 LINC00336Q6ZUF6 198 aa9.51□□□□□ -0.89
CCDC88C-202ENST00000334448 KRTAP7-1Q8IUC3 87 aa9.51□□□□□ -0.89
CCDC88C-202ENST00000334448 SMIM11BQ8TCY0 68 aa9.5□□□□□ -0.89
CCDC88C-202ENST00000334448 CBY1Q9Y3M2 126 aa9.5□□□□□ -0.89
CCDC88C-202ENST00000334448 DNAH8Q96JB1 4490 aa9.5□□□□□ -0.89
CCDC88C-202ENST00000334448 IGLV5-52A0A0A0MRZ9 124 aa9.49□□□□□ -0.89
CCDC88C-202ENST00000334448 S100A7L2Q5SY68 101 aa9.49□□□□□ -0.89
CCDC88C-202ENST00000334448 NKAPP1Q8N9T2 125 aa9.49□□□□□ -0.89
CCDC88C-202ENST00000334448 OR13C6PQ8NH95 151 aa9.49□□□□□ -0.89
CCDC88C-202ENST00000334448 TRBV20-1A0A075B6N2 111 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 TRBV10-3A0A0K0K1G6 114 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 K7EP34 96 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 COX6CP09669 75 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 PSMB2P49721 201 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 VAMP3Q15836 100 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 SPACA4Q8TDM5 124 aa9.48□□□□□ -0.89
CCDC88C-202ENST00000334448 PKD1P98161 4303 aa9.47□□□□□ -0.89
CCDC88C-202ENST00000334448 IGKV2-24A0A0C4DH68 120 aa9.47□□□□□ -0.89
CCDC88C-202ENST00000334448 FAM168BA1KXE4 195 aa9.47□□□□□ -0.89
CCDC88C-202ENST00000334448 C7orf33Q8WU49 177 aa9.47□□□□□ -0.89
CCDC88C-202ENST00000334448 SPCS1Q9Y6A9 102 aa9.47□□□□□ -0.89
CCDC88C-202ENST00000334448 C22orf24Q9Y442 160 aa9.46□□□□□ -0.9
CCDC88C-202ENST00000334448 TRAV23DV6A0A075B6W5 121 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 A0A1W2PNN7 141 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 CHTF8P0CG12 524 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 LINC01620Q4KN68 170 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 GTF2H5Q6ZYL4 71 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 MRPL55Q7Z7F7 128 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 KCNQ1DNQ9H478 68 aa9.45□□□□□ -0.9
CCDC88C-202ENST00000334448 TRBV7-6A0A0J9YX20 115 aa9.44□□□□□ -0.9
CCDC88C-202ENST00000334448 H0YGX0 51 aa9.44□□□□□ -0.9
CCDC88C-202ENST00000334448 KRTAP10-2P60368 255 aa9.44□□□□□ -0.9
CCDC88C-202ENST00000334448 FAM19A5Q7Z5A7 132 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-202ENST00000334448 IGLV1-50A0A075B6I6 118 aa9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 GAGE10A6NGK3 116 aa9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 PANO1I0J062 215 aa9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 SCGB1C2P0DMR2 95 aa9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 UBE2V1Q13404 147 aa9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-202ENST00000334448 M0QXV9 152 aa9.42□□□□□ -0.9
CCDC88C-202ENST00000334448 LST1O00453 97 aa9.42□□□□□ -0.9
CCDC88C-202ENST00000334448 PRYO14603 147 aa9.42□□□□□ -0.9
CCDC88C-202ENST00000334448 TCL1BO95988 128 aa9.42□□□□□ -0.9
CCDC88C-202ENST00000334448 LINC00167Q96N53 147 aa9.42□□□□□ -0.9
CCDC88C-202ENST00000334448 ZNF73O43830 326 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-202ENST00000334448 SPRR1AP35321 89 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms