RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 C15orf56Q8N910 161 aa13.71□□□□□ -0.21
SMCO4-201ENST00000298966 PPDPFQ9H3Y8 114 aa13.71□□□□□ -0.21
SMCO4-201ENST00000298966 TMEM238LA0A1B0GVL6 79 aa13.7□□□□□ -0.22
SMCO4-201ENST00000298966 A6NJY4 79 aa13.7□□□□□ -0.22
SMCO4-201ENST00000298966 PTTG1IPP53801 180 aa13.7□□□□□ -0.22
SMCO4-201ENST00000298966 COX17Q14061 63 aa13.7□□□□□ -0.22
SMCO4-201ENST00000298966 PLA2G2DQ9UNK4 145 aa13.7□□□□□ -0.22
SMCO4-201ENST00000298966 LRP1Q07954 4544 aaKnown RBP13.7□□□□□ -0.22
SMCO4-201ENST00000298966 IFITM1P13164 125 aa13.69□□□□□ -0.22
SMCO4-201ENST00000298966 C14orf177Q52M58 125 aa13.68□□□□□ -0.22
SMCO4-201ENST00000298966 ADAMTSL4-AS1Q5T5F5 129 aa13.68□□□□□ -0.22
SMCO4-201ENST00000298966 TRBV30A0A0K0K1B3 111 aa13.67□□□□□ -0.22
SMCO4-201ENST00000298966 ERG28Q9UKR5 140 aa13.67□□□□□ -0.22
SMCO4-201ENST00000298966 FAT3Q8TDW7 4589 aa13.66□□□□□ -0.22
SMCO4-201ENST00000298966 A0A1B0GWB2 263 aa13.66□□□□□ -0.22
SMCO4-201ENST00000298966 USP17L23D6RBM5 183 aa13.66□□□□□ -0.22
SMCO4-201ENST00000298966 RPL24P83731 157 aaKnown RBP13.66□□□□□ -0.22
SMCO4-201ENST00000298966 CAMK2N2Q96S95 79 aa13.65□□□□□ -0.22
SMCO4-201ENST00000298966 SMIM13P0DJ93 91 aa13.64□□□□□ -0.23
SMCO4-201ENST00000298966 C2orf82Q6UX34 121 aa13.64□□□□□ -0.23
SMCO4-201ENST00000298966 Q6ZSA8 131 aa13.64□□□□□ -0.23
SMCO4-201ENST00000298966 MUSTN1Q8IVN3 82 aa13.64□□□□□ -0.23
SMCO4-201ENST00000298966 OXTP01178 125 aa13.63□□□□□ -0.23
SMCO4-201ENST00000298966 RNF151Q2KHN1 245 aa13.63□□□□□ -0.23
SMCO4-201ENST00000298966 HIGD2BQ4VC39 106 aa13.63□□□□□ -0.23
SMCO4-201ENST00000298966 NHP2Q9NX24 153 aaKnown RBP13.63□□□□□ -0.23
SMCO4-201ENST00000298966 LINC00158P58513 81 aa13.62□□□□□ -0.23
SMCO4-201ENST00000298966 TAX1BP3O14907 124 aa13.61□□□□□ -0.23
SMCO4-201ENST00000298966 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.6□□□□□ -0.23
SMCO4-201ENST00000298966 SYCNQ0VAF6 134 aa13.6□□□□□ -0.23
SMCO4-201ENST00000298966 UNQ6190/PRO20217Q6UXQ8 127 aa13.6□□□□□ -0.23
SMCO4-201ENST00000298966 LINC00308Q8TCZ7 52 aa13.6□□□□□ -0.23
SMCO4-201ENST00000298966 A4D1N5 150 aa13.59□□□□□ -0.23
SMCO4-201ENST00000298966 MIR7-3HGQ8N6C7 128 aa13.58□□□□□ -0.24
SMCO4-201ENST00000298966 DAND5Q8N907 189 aa13.58□□□□□ -0.24
SMCO4-201ENST00000298966 C6orf48Q9UBA6 75 aa13.58□□□□□ -0.24
SMCO4-201ENST00000298966 A0A0U1RRA0 63 aa13.57□□□□□ -0.24
SMCO4-201ENST00000298966 PFN2P35080 140 aa13.57□□□□□ -0.24
SMCO4-201ENST00000298966 LINC00526Q96FQ7 95 aa13.57□□□□□ -0.24
SMCO4-201ENST00000298966 CARD19Q96LW7 228 aa13.57□□□□□ -0.24
SMCO4-201ENST00000298966 A0A0B4J2C4 111 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 LOC107984156A0A0G2JMH3 177 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 K7ERJ3 54 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 C10orf25Q5T742 122 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 Q6ZRU5 148 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 ARL17AQ8IVW1 177 aa13.56□□□□□ -0.24
SMCO4-201ENST00000298966 CFC1BP0CG36 223 aa13.55□□□□□ -0.24
SMCO4-201ENST00000298966 CFC1P0CG37 223 aa13.55□□□□□ -0.24
SMCO4-201ENST00000298966 SCXQ7RTU7 201 aa13.55□□□□□ -0.24
SMCO4-201ENST00000298966 PKIGQ9Y2B9 76 aa13.55□□□□□ -0.24
SMCO4-201ENST00000298966 CNBPP62633 177 aaKnown RBP13.54□□□□□ -0.24
SMCO4-201ENST00000298966 SOSTDC1Q6X4U4 206 aa13.54□□□□□ -0.24
SMCO4-201ENST00000298966 A0A1B0GV90 55 aa13.53□□□□□ -0.24
SMCO4-201ENST00000298966 C9orf118A6NHY6 69 aa13.53□□□□□ -0.24
SMCO4-201ENST00000298966 TLX1NBP0CAT3 122 aa13.53□□□□□ -0.24
SMCO4-201ENST00000298966 NPC2P61916 151 aa13.53□□□□□ -0.24
SMCO4-201ENST00000298966 WFDC2Q14508 124 aa13.53□□□□□ -0.24
SMCO4-201ENST00000298966 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.52□□□□□ -0.25
SMCO4-201ENST00000298966 NDUFC2-KCTD14E9PQ53 114 aa13.52□□□□□ -0.25
SMCO4-201ENST00000298966 EIF4EBP3O60516 100 aaPredicted RBP13.52□□□□□ -0.25
SMCO4-201ENST00000298966 KRTAP10-4P60372 401 aaPredicted RBP13.52□□□□□ -0.25
SMCO4-201ENST00000298966 PKHD1L1Q86WI1 4243 aa13.52□□□□□ -0.25
SMCO4-201ENST00000298966 RAB37Q96AX2 223 aa13.51□□□□□ -0.25
SMCO4-201ENST00000298966 PRO1854Q9UHT4 67 aa13.51□□□□□ -0.25
SMCO4-201ENST00000298966 LECT2O14960 151 aa13.5□□□□□ -0.25
SMCO4-201ENST00000298966 C9orf116Q5BN46 136 aaPredicted RBP13.49□□□□□ -0.25
SMCO4-201ENST00000298966 NDUFC2O95298 119 aa13.48□□□□□ -0.25
SMCO4-201ENST00000298966 LINC01620Q4KN68 170 aa13.48□□□□□ -0.25
SMCO4-201ENST00000298966 SND1-IT1Q9HBX3 110 aa13.48□□□□□ -0.25
SMCO4-201ENST00000298966 SLPIP03973 132 aa13.46□□□□□ -0.25
SMCO4-201ENST00000298966 LOC107984640A0A0U1RRK4 108 aa13.45□□□□□ -0.26
SMCO4-201ENST00000298966 H3BUT2 72 aa13.45□□□□□ -0.26
SMCO4-201ENST00000298966 CIRBP-AS1Q8TBR5 109 aa13.44□□□□□ -0.26
SMCO4-201ENST00000298966 A0A1W2PPM0 123 aa13.43□□□□□ -0.26
SMCO4-201ENST00000298966 TSPAN13O95857 204 aa13.43□□□□□ -0.26
SMCO4-201ENST00000298966 TRAV13-2A0A0B4J235 113 aa13.41□□□□□ -0.26
SMCO4-201ENST00000298966 C9orf163Q8N9P6 203 aa13.4□□□□□ -0.26
SMCO4-201ENST00000298966 FABP2P12104 132 aa13.39□□□□□ -0.27
SMCO4-201ENST00000298966 Q6ZRP5 223 aa13.39□□□□□ -0.27
SMCO4-201ENST00000298966 NAA38Q9BRA0 125 aaKnown RBP13.39□□□□□ -0.27
SMCO4-201ENST00000298966 IGKV2-28A0A075B6P5 120 aa13.38□□□□□ -0.27
SMCO4-201ENST00000298966 TRBV10-2A0A0K0K1G8 114 aa13.38□□□□□ -0.27
SMCO4-201ENST00000298966 IGKV2D-28P01615 120 aa13.38□□□□□ -0.27
SMCO4-201ENST00000298966 RPL13AP40429 203 aaKnown RBP13.38□□□□□ -0.27
SMCO4-201ENST00000298966 RPL37AP61513 92 aaKnown RBP13.38□□□□□ -0.27
SMCO4-201ENST00000298966 RPL18AQ02543 176 aaKnown RBP13.38□□□□□ -0.27
SMCO4-201ENST00000298966 VAMP3Q15836 100 aa13.38□□□□□ -0.27
SMCO4-201ENST00000298966 LYRM7Q5U5X0 104 aa13.37□□□□□ -0.27
SMCO4-201ENST00000298966 GAGE2EQ4V326 116 aa13.36□□□□□ -0.27
SMCO4-201ENST00000298966 GAGE2DQ9UEU5 116 aa13.36□□□□□ -0.27
SMCO4-201ENST00000298966 Q1RN00 199 aa13.35□□□□□ -0.27
SMCO4-201ENST00000298966 XAGE1AQ9HD64 81 aa13.35□□□□□ -0.27
SMCO4-201ENST00000298966 RNF213Q63HN8 5207 aa13.35□□□□□ -0.27
SMCO4-201ENST00000298966 LINC00337Q8N6G1 96 aa13.34□□□□□ -0.27
SMCO4-201ENST00000298966 H7C2G1 150 aa13.33□□□□□ -0.28
SMCO4-201ENST00000298966 LINC00474Q9P2X8 69 aa13.33□□□□□ -0.28
SMCO4-201ENST00000298966 K7EP34 96 aa13.32□□□□□ -0.28
SMCO4-201ENST00000298966 GTF2H5Q6ZYL4 71 aa13.32□□□□□ -0.28
SMCO4-201ENST00000298966 CBY1Q9Y3M2 126 aa13.32□□□□□ -0.28
SMCO4-201ENST00000298966 SPCS1Q9Y6A9 102 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms