RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 C6orf226Q5I0X4 101 aa9.07□□□□□ -0.96
NUP54-201ENST00000264883 DNAJC9-AS1A6NH13 148 aa9.06□□□□□ -0.96
NUP54-201ENST00000264883 FAM229BQ4G0N7 80 aa9.06□□□□□ -0.96
NUP54-201ENST00000264883 ESM1Q9NQ30 184 aa9.06□□□□□ -0.96
NUP54-201ENST00000264883 LAMTOR3Q9UHA4 124 aa9.06□□□□□ -0.96
NUP54-201ENST00000264883 ZNF561-AS1K7EIQ3 104 aa9.06□□□□□ -0.96
NUP54-201ENST00000264883 NOP10Q9NPE3 64 aaKnown RBP9.06□□□□□ -0.96
NUP54-201ENST00000264883 IGLV4-60A0A075B6I1 120 aa9.05□□□□□ -0.96
NUP54-201ENST00000264883 TRGV2A0A075B6R0 118 aa9.05□□□□□ -0.96
NUP54-201ENST00000264883 C6orf223Q8N319 242 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 C11orf44Q8N8P7 122 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 TRBV6-8A0A0A6YYG3 113 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 HIVEP2P31629 2446 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 NREPQ16612 68 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 C6orf99Q4VX62 202 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 SMR3AQ99954 134 aa9.04□□□□□ -0.96
NUP54-201ENST00000264883 CUBNO60494 3623 aa9.03□□□□□ -0.96
NUP54-201ENST00000264883 TRGV4A0A0C4DH28 118 aa9.03□□□□□ -0.96
NUP54-201ENST00000264883 TMEM254Q8TBM7 123 aa9.03□□□□□ -0.96
NUP54-201ENST00000264883 LINC00575Q6W349 94 aa9.02□□□□□ -0.96
NUP54-201ENST00000264883 FLNBO75369 2602 aaKnown RBP9.02□□□□□ -0.97
NUP54-201ENST00000264883 A0A1W2PRX2 142 aa9.02□□□□□ -0.97
NUP54-201ENST00000264883 PLAC8L1A1L4L8 177 aa9.02□□□□□ -0.97
NUP54-201ENST00000264883 HIVEP1P15822 2718 aa9.01□□□□□ -0.97
NUP54-201ENST00000264883 LOC100131303A0A0U1RQF7 123 aa9.01□□□□□ -0.97
NUP54-201ENST00000264883 SCXQ7RTU7 201 aa9.01□□□□□ -0.97
NUP54-201ENST00000264883 NSD1Q96L73 2696 aaPredicted RBP9.01□□□□□ -0.97
NUP54-201ENST00000264883 CCL24O00175 119 aa9□□□□□ -0.97
NUP54-201ENST00000264883 PDE6GP18545 87 aa9□□□□□ -0.97
NUP54-201ENST00000264883 ERC2-IT1O76042 136 aa8.99□□□□□ -0.97
NUP54-201ENST00000264883 Q8IZM0 81 aa8.99□□□□□ -0.97
NUP54-201ENST00000264883 LINC00959A0A1B0GUT2 108 aa8.99□□□□□ -0.97
NUP54-201ENST00000264883 ESRGQ1W209 222 aa8.99□□□□□ -0.97
NUP54-201ENST00000264883 C9orf66Q5T8R8 295 aa8.99□□□□□ -0.97
NUP54-201ENST00000264883 BPY2O14599 106 aa8.98□□□□□ -0.97
NUP54-201ENST00000264883 GIG44P09565 113 aaPredicted RBP8.98□□□□□ -0.97
NUP54-201ENST00000264883 CYSRT1A8MQ03 144 aa8.97□□□□□ -0.97
NUP54-201ENST00000264883 SETD2Q9BYW2 2564 aaPredicted RBP8.97□□□□□ -0.97
NUP54-201ENST00000264883 A0A1B0GUV1 79 aa8.97□□□□□ -0.97
NUP54-201ENST00000264883 FUSP35637 526 aaKnown RBP eCLIP8.97□□□□□ -0.97
NUP54-201ENST00000264883 PRYO14603 147 aa8.96□□□□□ -0.98
NUP54-201ENST00000264883 COX17Q14061 63 aa8.96□□□□□ -0.98
NUP54-201ENST00000264883 MUC7Q8TAX7 377 aa8.96□□□□□ -0.98
NUP54-201ENST00000264883 CSNK1G2-AS1Q8NCQ2 148 aa8.95□□□□□ -0.98
NUP54-201ENST00000264883 SPATA3Q8NHX4 192 aa8.95□□□□□ -0.98
NUP54-201ENST00000264883 SETXQ7Z333 2677 aaKnown RBP8.95□□□□□ -0.98
NUP54-201ENST00000264883 LINC01006Q8NI28 216 aa8.95□□□□□ -0.98
NUP54-201ENST00000264883 FN1P02751 2386 aaKnown RBP8.94□□□□□ -0.98
NUP54-201ENST00000264883 Q6ZQY7 126 aa8.94□□□□□ -0.98
NUP54-201ENST00000264883 INAFM1C9JVW0 142 aa8.93□□□□□ -0.98
NUP54-201ENST00000264883 Q6ZTC4 211 aa8.93□□□□□ -0.98
NUP54-201ENST00000264883 Q8NDZ9 215 aa8.93□□□□□ -0.98
NUP54-201ENST00000264883 IGLV1-51P01701 117 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 PMAIP1Q13794 54 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 PRR15Q8IV56 129 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 C19orf73Q9NVV2 129 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 H3BQ85 93 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 LINC00612Q8N6U2 182 aa8.92□□□□□ -0.98
NUP54-201ENST00000264883 C2CD3Q4AC94 2353 aa8.91□□□□□ -0.98
NUP54-201ENST00000264883 C9orf116Q5BN46 136 aaPredicted RBP8.9□□□□□ -0.98
NUP54-201ENST00000264883 OCR1Q9BZK8 76 aa8.9□□□□□ -0.99
NUP54-201ENST00000264883 IGHV4-28A0A0C4DH34 117 aa8.89□□□□□ -0.99
NUP54-201ENST00000264883 CLPSL2Q6UWE3 100 aa8.89□□□□□ -0.99
NUP54-201ENST00000264883 Q8N9L7 120 aa8.88□□□□□ -0.99
NUP54-201ENST00000264883 KIAA0087Q14695 138 aa8.88□□□□□ -0.99
NUP54-201ENST00000264883 CD164L2Q6UWJ8 174 aa8.88□□□□□ -0.99
NUP54-201ENST00000264883 HIGD2AQ9BW72 106 aa8.88□□□□□ -0.99
NUP54-201ENST00000264883 F8P00451 2351 aa8.87□□□□□ -0.99
NUP54-201ENST00000264883 GYPEP15421 78 aa8.87□□□□□ -0.99
NUP54-201ENST00000264883 Q6ZRU5 148 aa8.87□□□□□ -0.99
NUP54-201ENST00000264883 IGKV4-1P06312 121 aa8.86□□□□□ -0.99
NUP54-201ENST00000264883 LINC00269Q8N2A0 174 aa8.86□□□□□ -0.99
NUP54-201ENST00000264883 PRO0255Q9UI72 69 aa8.86□□□□□ -0.99
NUP54-201ENST00000264883 WFDC10AQ9H1F0 79 aa8.86□□□□□ -0.99
NUP54-201ENST00000264883 hDV103S1A0JD37 113 aa8.85□□□□□ -0.99
NUP54-201ENST00000264883 DAD1P61803 113 aa8.85□□□□□ -0.99
NUP54-201ENST00000264883 IGLV6-57P01721 117 aa8.85□□□□□ -0.99
NUP54-201ENST00000264883 NIPBLQ6KC79 2804 aaeCLIP8.85□□□□□ -0.99
NUP54-201ENST00000264883 DEFB130BP0DP73 79 aa8.84□□□□□ -0.99
NUP54-201ENST00000264883 DEFB130AP0DP74 79 aa8.84□□□□□ -0.99
NUP54-201ENST00000264883 COX7BP24311 80 aa8.84□□□□□ -0.99
NUP54-201ENST00000264883 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.84□□□□□ -0.99
NUP54-201ENST00000264883 WNK1Q9H4A3 2382 aa8.84□□□□□ -0.99
NUP54-201ENST00000264883 LRCOL1A6NCL2 159 aa8.83□□□□□ -1
NUP54-201ENST00000264883 Q1T7F1 81 aa8.83□□□□□ -1
NUP54-201ENST00000264883 KRTAP10-3P60369 221 aa8.83□□□□□ -1
NUP54-201ENST00000264883 Q6ZRP5 223 aa8.82□□□□□ -1
NUP54-201ENST00000264883 CHCHD10Q8WYQ3 142 aaPredicted RBP8.81□□□□□ -1
NUP54-201ENST00000264883 DIRC1Q969H9 104 aa8.81□□□□□ -1
NUP54-201ENST00000264883 LYRM9A8MSI8 78 aa8.81□□□□□ -1
NUP54-201ENST00000264883 TENM1Q9UKZ4 2725 aa8.8□□□□□ -1
NUP54-201ENST00000264883 JMJD1CQ15652 2540 aa8.79□□□□□ -1
NUP54-201ENST00000264883 IGLV10-54A0A075B6I4 117 aa8.79□□□□□ -1
NUP54-201ENST00000264883 REG3AQ06141 175 aa8.79□□□□□ -1
NUP54-201ENST00000264883 C1orf64Q8NEQ6 169 aa8.79□□□□□ -1
NUP54-201ENST00000264883 NOTCH3Q9UM47 2321 aa8.79□□□□□ -1
NUP54-201ENST00000264883 C10orf25Q5T742 122 aa8.78□□□□□ -1
NUP54-201ENST00000264883 PSPHP1O15172 72 aa8.77□□□□□ -1.01
NUP54-201ENST00000264883 UNQ6190/PRO20217Q6UXQ8 127 aa8.77□□□□□ -1.01
NUP54-201ENST00000264883 FAM30AQ9NZY2 134 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 432.2 ms