RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 FAM30AQ9NZY2 134 aa9.65□□□□□ -0.86
CDH3-201ENST00000264012 H3BNG1 76 aa9.65□□□□□ -0.87
CDH3-201ENST00000264012 C22orf24Q9Y442 160 aa9.64□□□□□ -0.87
CDH3-201ENST00000264012 A0A096LNT2 108 aa9.64□□□□□ -0.87
CDH3-201ENST00000264012 K7ERS5 55 aa9.64□□□□□ -0.87
CDH3-201ENST00000264012 PRR4Q16378 134 aa9.64□□□□□ -0.87
CDH3-201ENST00000264012 Q8NAQ8 132 aa9.64□□□□□ -0.87
CDH3-201ENST00000264012 SOSTDC1Q6X4U4 206 aa9.63□□□□□ -0.87
CDH3-201ENST00000264012 C6orf48Q9UBA6 75 aa9.63□□□□□ -0.87
CDH3-201ENST00000264012 Q8N3U1 123 aa9.63□□□□□ -0.87
CDH3-201ENST00000264012 PRLHP81277 87 aa9.62□□□□□ -0.87
CDH3-201ENST00000264012 LINC00846Q9NV44 126 aa9.62□□□□□ -0.87
CDH3-201ENST00000264012 A0A087WSZ3 146 aa9.61□□□□□ -0.87
CDH3-201ENST00000264012 CIRBP-AS1Q8TBR5 109 aa9.61□□□□□ -0.87
CDH3-201ENST00000264012 CENPEQ02224 2701 aa9.61□□□□□ -0.87
CDH3-201ENST00000264012 Q6ZVQ6 151 aa9.59□□□□□ -0.87
CDH3-201ENST00000264012 MDFIQ99750 246 aa9.59□□□□□ -0.87
CDH3-201ENST00000264012 Q8N9L7 120 aa9.58□□□□□ -0.88
CDH3-201ENST00000264012 CRYGAP11844 174 aa9.58□□□□□ -0.88
CDH3-201ENST00000264012 FLNAP21333 2647 aaKnown RBP9.58□□□□□ -0.88
CDH3-201ENST00000264012 BPTFQ12830 3046 aa9.57□□□□□ -0.88
CDH3-201ENST00000264012 LAMA3Q16787 3333 aa9.57□□□□□ -0.88
CDH3-201ENST00000264012 SMCR5Q8TEV8 140 aa9.57□□□□□ -0.88
CDH3-201ENST00000264012 LINC01547P58512 204 aaPredicted RBP9.56□□□□□ -0.88
CDH3-201ENST00000264012 LINC00167Q96N53 147 aa9.56□□□□□ -0.88
CDH3-201ENST00000264012 A6NED7 52 aa9.55□□□□□ -0.88
CDH3-201ENST00000264012 LINC00208Q96KT6 92 aa9.55□□□□□ -0.88
CDH3-201ENST00000264012 FAM218AQ96MZ4 157 aa9.55□□□□□ -0.88
CDH3-201ENST00000264012 IGHV6-1A0A0B4J1U7 121 aa9.55□□□□□ -0.88
CDH3-201ENST00000264012 RPS28P62857 69 aaKnown RBP9.55□□□□□ -0.88
CDH3-201ENST00000264012 MKI67P46013 3256 aaKnown RBP9.54□□□□□ -0.88
CDH3-201ENST00000264012 CSNK1G2-AS1Q8NCQ2 148 aa9.54□□□□□ -0.88
CDH3-201ENST00000264012 PRR15LQ9BU68 103 aa9.54□□□□□ -0.88
CDH3-201ENST00000264012 TRANK1O15050 2925 aa9.54□□□□□ -0.88
CDH3-201ENST00000264012 DEFB116Q30KQ4 102 aa9.54□□□□□ -0.88
CDH3-201ENST00000264012 KIAA0087Q14695 138 aa9.53□□□□□ -0.88
CDH3-201ENST00000264012 BCE1O60756 84 aa9.53□□□□□ -0.88
CDH3-201ENST00000264012 HELZ2Q9BYK8 2649 aaKnown RBP9.53□□□□□ -0.88
CDH3-201ENST00000264012 ITPR3Q14573 2671 aa9.52□□□□□ -0.88
CDH3-201ENST00000264012 C1orf195Q5TG92 126 aa9.52□□□□□ -0.89
CDH3-201ENST00000264012 LINC00588Q9Y4M8 146 aa9.52□□□□□ -0.89
CDH3-201ENST00000264012 ATRQ13535 2644 aa9.51□□□□□ -0.89
CDH3-201ENST00000264012 MAST4O15021 2626 aa9.5□□□□□ -0.89
CDH3-201ENST00000264012 SPATA3Q8NHX4 192 aa9.5□□□□□ -0.89
CDH3-201ENST00000264012 LITAFQ99732 161 aa9.5□□□□□ -0.89
CDH3-201ENST00000264012 CXCL6P80162 114 aa9.5□□□□□ -0.89
CDH3-201ENST00000264012 ELOF1P60002 83 aaKnown RBP9.48□□□□□ -0.89
CDH3-201ENST00000264012 CFAP46Q8IYW2 2715 aa9.48□□□□□ -0.89
CDH3-201ENST00000264012 TRBV7-6A0A0J9YX20 115 aa9.48□□□□□ -0.89
CDH3-201ENST00000264012 TMEM254Q8TBM7 123 aa9.48□□□□□ -0.89
CDH3-201ENST00000264012 GIG44P09565 113 aaPredicted RBP9.47□□□□□ -0.89
CDH3-201ENST00000264012 C19orf73Q9NVV2 129 aa9.47□□□□□ -0.89
CDH3-201ENST00000264012 BRCA2P51587 3418 aa9.47□□□□□ -0.89
CDH3-201ENST00000264012 GVQW2A0A096LPI5 108 aaPredicted RBP9.46□□□□□ -0.9
CDH3-201ENST00000264012 NBDYA0A0U1RRE5 68 aa9.45□□□□□ -0.9
CDH3-201ENST00000264012 HCG22E2RYF7 251 aa9.45□□□□□ -0.9
CDH3-201ENST00000264012 ZNF292O60281 2723 aa9.45□□□□□ -0.9
CDH3-201ENST00000264012 DNAH10OSP0CZ25 163 aa9.44□□□□□ -0.9
CDH3-201ENST00000264012 KRTAP10-3P60369 221 aa9.44□□□□□ -0.9
CDH3-201ENST00000264012 Q6ZRX8 168 aa9.44□□□□□ -0.9
CDH3-201ENST00000264012 KRTAP1-3Q8IUG1 177 aa9.43□□□□□ -0.9
CDH3-201ENST00000264012 PHF5AQ7RTV0 110 aaKnown RBP9.42□□□□□ -0.9
CDH3-201ENST00000264012 Q6ZRP5 223 aa9.42□□□□□ -0.9
CDH3-201ENST00000264012 MGAQ8IWI9 3026 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 H0Y9P7 68 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 KRTAP10-11P60412 298 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 PCOTHQ58A44 107 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 C16orf90A8MZG2 172 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 PMAIP1Q13794 54 aa9.41□□□□□ -0.9
CDH3-201ENST00000264012 PRO0628Q9UI54 55 aa9.4□□□□□ -0.9
CDH3-201ENST00000264012 VPREB1P12018 145 aa9.39□□□□□ -0.91
CDH3-201ENST00000264012 Q6ZQT0 140 aa9.39□□□□□ -0.91
CDH3-201ENST00000264012 RETNLBQ9BQ08 111 aa9.39□□□□□ -0.91
CDH3-201ENST00000264012 CFAP54Q96N23 3096 aa9.38□□□□□ -0.91
CDH3-201ENST00000264012 MOBPQ13875 183 aa9.38□□□□□ -0.91
CDH3-201ENST00000264012 EIF4EBP3O60516 100 aaPredicted RBP9.38□□□□□ -0.91
CDH3-201ENST00000264012 LAMA2P24043 3122 aaKnown RBP9.38□□□□□ -0.91
CDH3-201ENST00000264012 K7EIL1 84 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 RTL8CO15255 209 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 IGLV6-57P01721 117 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 LINC00612Q8N6U2 182 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 LIMD2Q9BT23 127 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 CHTF8P0CG12 524 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 ST20-AS1Q8NBB2 130 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 Q8NBF4 154 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 KRTAP1-1Q07627 177 aa9.37□□□□□ -0.91
CDH3-201ENST00000264012 LOC110117498A0A087WWA1 95 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 EPM2AB3EWF7 344 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 LINC00476Q8WZB0 136 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 A0A1B0GW54 56 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 FAM229AH3BQW9 127 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 SMIM29Q86T20 159 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 PRR34Q9NV39 138 aa9.36□□□□□ -0.91
CDH3-201ENST00000264012 PRUNE2Q8WUY3 3088 aa9.35□□□□□ -0.91
CDH3-201ENST00000264012 WWC2-AS2Q96NR7 200 aa9.34□□□□□ -0.91
CDH3-201ENST00000264012 A0A0C4DFX4 3053 aa9.34□□□□□ -0.91
CDH3-201ENST00000264012 FAM168BA1KXE4 195 aa9.33□□□□□ -0.92
CDH3-201ENST00000264012 WDFY4Q6ZS81 3184 aa9.32□□□□□ -0.92
CDH3-201ENST00000264012 SERTAD4-AS1Q5TG53 156 aa9.31□□□□□ -0.92
CDH3-201ENST00000264012 C1orf64Q8NEQ6 169 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms