RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 SMIM11BQ8TCY0 68 aa11.39□□□□□ -0.59
CTCF-201ENST00000264010 CHCHD10Q8WYQ3 142 aaPredicted RBP11.39□□□□□ -0.59
CTCF-201ENST00000264010 RPS28P62857 69 aaKnown RBP11.39□□□□□ -0.59
CTCF-201ENST00000264010 Q6JHZ5 121 aa11.39□□□□□ -0.59
CTCF-201ENST00000264010 TMEM256-PLSCR3K7ERE1 68 aa11.38□□□□□ -0.59
CTCF-201ENST00000264010 A0A1B0GUV1 79 aa11.38□□□□□ -0.59
CTCF-201ENST00000264010 SMCR5Q8TEV8 140 aa11.38□□□□□ -0.59
CTCF-201ENST00000264010 IGHV4-30-4P0DP06 118 aa11.38□□□□□ -0.59
CTCF-201ENST00000264010 CELA1Q9UNI1 258 aa11.38□□□□□ -0.59
CTCF-201ENST00000264010 A0A087WYN8 130 aa11.37□□□□□ -0.59
CTCF-201ENST00000264010 TRBV7-6A0A0J9YX20 115 aa11.37□□□□□ -0.59
CTCF-201ENST00000264010 CD164L2Q6UWJ8 174 aa11.37□□□□□ -0.59
CTCF-201ENST00000264010 IGHV3OR16-9A0A0B4J2B5 98 aa11.36□□□□□ -0.59
CTCF-201ENST00000264010 KLK12Q9UKR0 248 aa11.36□□□□□ -0.59
CTCF-201ENST00000264010 FBN2P35556 2912 aa11.36□□□□□ -0.59
CTCF-201ENST00000264010 LINC00474Q9P2X8 69 aa11.35□□□□□ -0.59
CTCF-201ENST00000264010 C2orf48Q96LS8 159 aa11.35□□□□□ -0.59
CTCF-201ENST00000264010 Q8IZM0 81 aa11.34□□□□□ -0.59
CTCF-201ENST00000264010 MXRA5Q9NR99 2828 aa11.34□□□□□ -0.59
CTCF-201ENST00000264010 SPAG11BQ08648 103 aa11.34□□□□□ -0.59
CTCF-201ENST00000264010 CCL18P55774 89 aa11.33□□□□□ -0.6
CTCF-201ENST00000264010 EIF4EBP3O60516 100 aaPredicted RBP11.33□□□□□ -0.6
CTCF-201ENST00000264010 C6orf99Q4VX62 202 aa11.33□□□□□ -0.6
CTCF-201ENST00000264010 LELP1Q5T871 98 aa11.33□□□□□ -0.6
CTCF-201ENST00000264010 ZNF561-AS1K7EIQ3 104 aa11.33□□□□□ -0.6
CTCF-201ENST00000264010 CHKB-CPT1BH3BT56 60 aa11.32□□□□□ -0.6
CTCF-201ENST00000264010 NBPF19A0A087WUL8 3843 aa11.32□□□□□ -0.6
CTCF-201ENST00000264010 Q8N3U1 123 aa11.31□□□□□ -0.6
CTCF-201ENST00000264010 C3orf84H3BNL1 204 aa11.31□□□□□ -0.6
CTCF-201ENST00000264010 PRR3P79522 188 aaKnown RBP11.31□□□□□ -0.6
CTCF-201ENST00000264010 LINC00612Q8N6U2 182 aa11.31□□□□□ -0.6
CTCF-201ENST00000264010 RPL28P46779 137 aaKnown RBP11.3□□□□□ -0.6
CTCF-201ENST00000264010 TRAV7A0A075B6U4 112 aa11.29□□□□□ -0.6
CTCF-201ENST00000264010 OXLD1Q5BKU9 147 aa11.29□□□□□ -0.6
CTCF-201ENST00000264010 LINC01561Q8N1V8 128 aa11.29□□□□□ -0.6
CTCF-201ENST00000264010 A6NED7 52 aa11.29□□□□□ -0.6
CTCF-201ENST00000264010 BPY2O14599 106 aa11.29□□□□□ -0.6
CTCF-201ENST00000264010 ITPR2Q14571 2701 aa11.28□□□□□ -0.6
CTCF-201ENST00000264010 FAM218AQ96MZ4 157 aa11.28□□□□□ -0.6
CTCF-201ENST00000264010 ATP5EP2Q5VTU8 51 aa11.27□□□□□ -0.6
CTCF-201ENST00000264010 HIGD2BQ4VC39 106 aa11.27□□□□□ -0.61
CTCF-201ENST00000264010 Q6ZQY7 126 aa11.27□□□□□ -0.61
CTCF-201ENST00000264010 SETXQ7Z333 2677 aaKnown RBP11.26□□□□□ -0.61
CTCF-201ENST00000264010 Q8N9L7 120 aa11.26□□□□□ -0.61
CTCF-201ENST00000264010 DEFB121Q5J5C9 76 aa11.26□□□□□ -0.61
CTCF-201ENST00000264010 A0A0J9YWU9 116 aa11.25□□□□□ -0.61
CTCF-201ENST00000264010 FAM30AQ9NZY2 134 aa11.25□□□□□ -0.61
CTCF-201ENST00000264010 COX17Q14061 63 aa11.24□□□□□ -0.61
CTCF-201ENST00000264010 Q8NAQ8 132 aa11.24□□□□□ -0.61
CTCF-201ENST00000264010 CCKP06307 115 aa11.23□□□□□ -0.61
CTCF-201ENST00000264010 LINC00337Q8N6G1 96 aa11.23□□□□□ -0.61
CTCF-201ENST00000264010 CAMK2N2Q96S95 79 aa11.23□□□□□ -0.61
CTCF-201ENST00000264010 KPRPQ5T749 579 aaPredicted RBP11.23□□□□□ -0.61
CTCF-201ENST00000264010 ATRQ13535 2644 aa11.22□□□□□ -0.61
CTCF-201ENST00000264010 NDUFC1O43677 76 aa11.22□□□□□ -0.61
CTCF-201ENST00000264010 IGKV2D-24A0A075B6R9 120 aa11.21□□□□□ -0.61
CTCF-201ENST00000264010 MP68P56378 58 aa11.21□□□□□ -0.62
CTCF-201ENST00000264010 C11orf45Q8TAV5 145 aa11.21□□□□□ -0.62
CTCF-201ENST00000264010 NF1P21359 2839 aa11.21□□□□□ -0.62
CTCF-201ENST00000264010 XAGE1AQ9HD64 81 aa11.2□□□□□ -0.62
CTCF-201ENST00000264010 SPATA3Q8NHX4 192 aa11.2□□□□□ -0.62
CTCF-201ENST00000264010 TMEM254Q8TBM7 123 aa11.2□□□□□ -0.62
CTCF-201ENST00000264010 CYSTM1Q9H1C7 97 aa11.19□□□□□ -0.62
CTCF-201ENST00000264010 DEFB131BA0A096LNP1 70 aa11.19□□□□□ -0.62
CTCF-201ENST00000264010 F8WDY8 70 aa11.18□□□□□ -0.62
CTCF-201ENST00000264010 MUC7Q8TAX7 377 aa11.18□□□□□ -0.62
CTCF-201ENST00000264010 FLNBO75369 2602 aaKnown RBP11.17□□□□□ -0.62
CTCF-201ENST00000264010 ESRGQ1W209 222 aa11.17□□□□□ -0.62
CTCF-201ENST00000264010 LYPD5Q6UWN5 251 aa11.17□□□□□ -0.62
CTCF-201ENST00000264010 UNQ6190/PRO20217Q6UXQ8 127 aa11.17□□□□□ -0.62
CTCF-201ENST00000264010 C9orf116Q5BN46 136 aaPredicted RBP11.17□□□□□ -0.62
CTCF-201ENST00000264010 CYSRT1A8MQ03 144 aa11.16□□□□□ -0.62
CTCF-201ENST00000264010 TRAV10A0A0B4J240 114 aa11.15□□□□□ -0.62
CTCF-201ENST00000264010 Q6ZTC4 211 aa11.15□□□□□ -0.62
CTCF-201ENST00000264010 IGKV2-28A0A075B6P5 120 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 IGKV2D-28P01615 120 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 NDUFS5O43920 106 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 NKAPP1Q8N9T2 125 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 PRYO14603 147 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 DIRC1Q969H9 104 aa11.14□□□□□ -0.63
CTCF-201ENST00000264010 ATP5EP56381 51 aaPredicted RBP11.13□□□□□ -0.63
CTCF-201ENST00000264010 GCN1Q92616 2671 aaKnown RBP11.13□□□□□ -0.63
CTCF-201ENST00000264010 WFDC10BQ8IUB3 73 aa11.13□□□□□ -0.63
CTCF-201ENST00000264010 WFDC13Q8IUB5 93 aa11.13□□□□□ -0.63
CTCF-201ENST00000264010 PRR15LQ9BU68 103 aa11.13□□□□□ -0.63
CTCF-201ENST00000264010 TM2D3Q9BRN9 247 aa11.12□□□□□ -0.63
CTCF-201ENST00000264010 LINC01547P58512 204 aaPredicted RBP11.11□□□□□ -0.63
CTCF-201ENST00000264010 C6orf223Q8N319 242 aa11.11□□□□□ -0.63
CTCF-201ENST00000264010 Q6ZVQ6 151 aa11.11□□□□□ -0.63
CTCF-201ENST00000264010 HIGD2AQ9BW72 106 aa11.11□□□□□ -0.63
CTCF-201ENST00000264010 WIPF1O43516 503 aa11.1□□□□□ -0.63
CTCF-201ENST00000264010 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
CTCF-201ENST00000264010 H3BNG1 76 aa11.08□□□□□ -0.64
CTCF-201ENST00000264010 Q8N814 137 aa11.08□□□□□ -0.64
CTCF-201ENST00000264010 PDE6GP18545 87 aa11.07□□□□□ -0.64
CTCF-201ENST00000264010 LINC01600Q96MT4 127 aa11.07□□□□□ -0.64
CTCF-201ENST00000264010 C9orf129Q5T035 196 aaKnown RBP11.07□□□□□ -0.64
CTCF-201ENST00000264010 ZNF469Q96JG9 3925 aaPredicted RBP11.07□□□□□ -0.64
CTCF-201ENST00000264010 H3BQ85 93 aa11.06□□□□□ -0.64
CTCF-201ENST00000264010 KIAA0087Q14695 138 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 171.6 ms