RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 FAM19A3Q7Z5A8 133 aa12.74□□□□□ -0.37
NEDD8-201ENST00000250495 PMCHL2Q9BQD1 86 aa12.74□□□□□ -0.37
NEDD8-201ENST00000250495 TOMM7Q9P0U1 55 aa12.74□□□□□ -0.37
NEDD8-201ENST00000250495 IGIPA6NJ69 53 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 M0R143 59 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 SEC11AP67812 179 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 PAPPA-AS1Q5QFB9 102 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 TIMM17AQ99595 171 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 RNF213Q63HN8 5207 aa12.73□□□□□ -0.37
NEDD8-201ENST00000250495 IGLV1-50A0A075B6I6 118 aa12.72□□□□□ -0.37
NEDD8-201ENST00000250495 DPM2O94777 84 aa12.72□□□□□ -0.37
NEDD8-201ENST00000250495 IGKCP01834 107 aa12.72□□□□□ -0.37
NEDD8-201ENST00000250495 SLC25A34Q6PIV7 304 aa12.72□□□□□ -0.37
NEDD8-201ENST00000250495 Q8IZM0 81 aa12.72□□□□□ -0.37
NEDD8-201ENST00000250495 PLNP26678 52 aa12.71□□□□□ -0.37
NEDD8-201ENST00000250495 COX8AP10176 69 aa12.7□□□□□ -0.38
NEDD8-201ENST00000250495 HERVK_113P63121 156 aa12.7□□□□□ -0.38
NEDD8-201ENST00000250495 F8VRH5 84 aa12.69□□□□□ -0.38
NEDD8-201ENST00000250495 SNHG12Q9BXW3 62 aa12.69□□□□□ -0.38
NEDD8-201ENST00000250495 DLEU1O43261 78 aa12.68□□□□□ -0.38
NEDD8-201ENST00000250495 GEMIN7Q9H840 131 aaKnown RBP12.68□□□□□ -0.38
NEDD8-201ENST00000250495 KRTAP1-4P0C5Y4 121 aa12.67□□□□□ -0.38
NEDD8-201ENST00000250495 ANKRD39Q53RE8 183 aa12.67□□□□□ -0.38
NEDD8-201ENST00000250495 CDKN2A-AS1Q9UH64 79 aa12.67□□□□□ -0.38
NEDD8-201ENST00000250495 LINC00469Q8N7U9 141 aa12.66□□□□□ -0.38
NEDD8-201ENST00000250495 CHTOPQ9Y3Y2 248 aaKnown RBP12.66□□□□□ -0.38
NEDD8-201ENST00000250495 C22orf24Q9Y442 160 aa12.66□□□□□ -0.38
NEDD8-201ENST00000250495 ZNF861PO60384 105 aa12.65□□□□□ -0.38
NEDD8-201ENST00000250495 RPL13AP40429 203 aaKnown RBP12.65□□□□□ -0.38
NEDD8-201ENST00000250495 BOD1L2Q8IYS8 172 aa12.64□□□□□ -0.39
NEDD8-201ENST00000250495 XAGE1AQ9HD64 81 aa12.64□□□□□ -0.39
NEDD8-201ENST00000250495 CXCL5P42830 114 aa12.63□□□□□ -0.39
NEDD8-201ENST00000250495 PMVKQ15126 192 aa12.63□□□□□ -0.39
NEDD8-201ENST00000250495 TP73-AS1Q9UF72 201 aa12.6□□□□□ -0.39
NEDD8-201ENST00000250495 CST9LQ9H4G1 147 aa12.59□□□□□ -0.39
NEDD8-201ENST00000250495 LPAP08519 4548 aa12.59□□□□□ -0.39
NEDD8-201ENST00000250495 TINCRA0A1B0GVN0 87 aa12.58□□□□□ -0.4
NEDD8-201ENST00000250495 C2orf91Q6ZV80 131 aa12.58□□□□□ -0.4
NEDD8-201ENST00000250495 MRPL55Q7Z7F7 128 aaKnown RBP12.58□□□□□ -0.4
NEDD8-201ENST00000250495 NMUP48645 174 aa12.57□□□□□ -0.4
NEDD8-201ENST00000250495 COL5A1-AS1Q5SY13 56 aa12.57□□□□□ -0.4
NEDD8-201ENST00000250495 COX7B2Q8TF08 81 aa12.57□□□□□ -0.4
NEDD8-201ENST00000250495 SMIM1B2RUZ4 78 aa12.56□□□□□ -0.4
NEDD8-201ENST00000250495 HIGD1BQ9P298 99 aa12.56□□□□□ -0.4
NEDD8-201ENST00000250495 IGLV5-45A0A087WSX0 123 aa12.54□□□□□ -0.4
NEDD8-201ENST00000250495 IGKV2D-26A0A0A0MRZ7 120 aa12.54□□□□□ -0.4
NEDD8-201ENST00000250495 E9PLD3 99 aa12.54□□□□□ -0.4
NEDD8-201ENST00000250495 RPL28P46779 137 aaKnown RBP12.54□□□□□ -0.4
NEDD8-201ENST00000250495 C11orf86A6NJI1 115 aa12.53□□□□□ -0.4
NEDD8-201ENST00000250495 BCE1O60756 84 aa12.53□□□□□ -0.4
NEDD8-201ENST00000250495 HERVK_113P61574 105 aa12.53□□□□□ -0.4
NEDD8-201ENST00000250495 PRR4Q16378 134 aa12.53□□□□□ -0.4
NEDD8-201ENST00000250495 PCP2Q8IVA1 136 aa12.53□□□□□ -0.4
NEDD8-201ENST00000250495 HINT1P49773 126 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-201ENST00000250495 HSD52Q0P140 79 aa12.52□□□□□ -0.41
NEDD8-201ENST00000250495 BATFQ16520 125 aa12.52□□□□□ -0.41
NEDD8-201ENST00000250495 LINC00167Q96N53 147 aa12.52□□□□□ -0.41
NEDD8-201ENST00000250495 BVES-AS1Q5T3Y7 98 aa12.51□□□□□ -0.41
NEDD8-201ENST00000250495 A0A1B0GV90 55 aa12.49□□□□□ -0.41
NEDD8-201ENST00000250495 RPL37AP8A6NKH3 93 aa12.49□□□□□ -0.41
NEDD8-201ENST00000250495 SPINK8P0C7L1 97 aa12.49□□□□□ -0.41
NEDD8-201ENST00000250495 H3BRM9 83 aa12.48□□□□□ -0.41
NEDD8-201ENST00000250495 IGLV5-37A0A075B6J1 123 aa12.47□□□□□ -0.41
NEDD8-201ENST00000250495 CRYGAP11844 174 aa12.47□□□□□ -0.41
NEDD8-201ENST00000250495 NKAPP1Q8N9T2 125 aa12.47□□□□□ -0.41
NEDD8-201ENST00000250495 GAGE10A6NGK3 116 aa12.46□□□□□ -0.41
NEDD8-201ENST00000250495 MYMXA0A1B0GTQ4 84 aa12.45□□□□□ -0.42
NEDD8-201ENST00000250495 TAL2Q16559 108 aa12.45□□□□□ -0.42
NEDD8-201ENST00000250495 A0A087X002 238 aa12.44□□□□□ -0.42
NEDD8-201ENST00000250495 TSPAN13O95857 204 aa12.44□□□□□ -0.42
NEDD8-201ENST00000250495 TMEM170BQ5T4T1 132 aa12.44□□□□□ -0.42
NEDD8-201ENST00000250495 TYMSOSQ8TAI1 123 aa12.44□□□□□ -0.42
NEDD8-201ENST00000250495 TMEM223A0PJW6 202 aa12.43□□□□□ -0.42
NEDD8-201ENST00000250495 ZNF22P17026 224 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-201ENST00000250495 TTTY13Q9BZ97 58 aa12.43□□□□□ -0.42
NEDD8-201ENST00000250495 UBE2AP49459 152 aa12.42□□□□□ -0.42
NEDD8-201ENST00000250495 A6NDN8 102 aa12.41□□□□□ -0.42
NEDD8-201ENST00000250495 LEPROTO15243 131 aa12.41□□□□□ -0.42
NEDD8-201ENST00000250495 PFN2P35080 140 aa12.4□□□□□ -0.42
NEDD8-201ENST00000250495 PLEKHB2Q96CS7 222 aa12.4□□□□□ -0.42
NEDD8-201ENST00000250495 ZNF815PA8K554 130 aa12.39□□□□□ -0.43
NEDD8-201ENST00000250495 KRTAP13-1Q8IUC0 172 aa12.39□□□□□ -0.43
NEDD8-201ENST00000250495 IGLV5-39A0A0G2JS06 123 aa12.38□□□□□ -0.43
NEDD8-201ENST00000250495 J3QQQ9 107 aa12.38□□□□□ -0.43
NEDD8-201ENST00000250495 IGKV2-28A0A075B6P5 120 aa12.37□□□□□ -0.43
NEDD8-201ENST00000250495 IGKV2D-28P01615 120 aa12.37□□□□□ -0.43
NEDD8-201ENST00000250495 ANAPC11Q9NYG5 84 aa12.37□□□□□ -0.43
NEDD8-201ENST00000250495 LGALS3P17931 250 aaKnown RBP12.36□□□□□ -0.43
NEDD8-201ENST00000250495 COX17Q14061 63 aa12.36□□□□□ -0.43
NEDD8-201ENST00000250495 FAM229BQ4G0N7 80 aa12.36□□□□□ -0.43
NEDD8-201ENST00000250495 CEND1Q8N111 149 aa12.36□□□□□ -0.43
NEDD8-201ENST00000250495 TAX1BP3O14907 124 aa12.35□□□□□ -0.43
NEDD8-201ENST00000250495 RPL24P83731 157 aaKnown RBP12.35□□□□□ -0.43
NEDD8-201ENST00000250495 ERG28Q9UKR5 140 aa12.35□□□□□ -0.43
NEDD8-201ENST00000250495 TSPEAR-AS2P59090 65 aa12.34□□□□□ -0.43
NEDD8-201ENST00000250495 SCGB1D4Q6XE38 83 aa12.34□□□□□ -0.43
NEDD8-201ENST00000250495 SND1-IT1Q9HBX3 110 aa12.34□□□□□ -0.43
NEDD8-201ENST00000250495 SPANXB1Q9NS25 103 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-201ENST00000250495 VPREB1P12018 145 aa12.33□□□□□ -0.44
NEDD8-201ENST00000250495 KRTAP13-2Q52LG2 175 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms