RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SPAG11BQ08648 103 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 BRD3OSQ6XYD6 125 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 Q6ZQY7 126 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 CDC42SE1Q9NRR8 79 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 IGKV2-28A0A075B6P5 120 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 IGKV2D-28P01615 120 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 CHCHD7Q9BUK0 85 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 KAAG1Q9UBP8 84 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 COX7BP24311 80 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 Q8N9L7 120 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 MAPK1IP1LQ8NDC0 245 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 ZNF706Q9Y5V0 76 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-216ENST00000637968 KLLNB2CW77 178 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 F8W735 103 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-216ENST00000637968 K7EQG2 157 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 Q8NA96 180 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 DEFB131AP59861 70 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 Q5VV11 94 aa4.04□□□□□ -1.76
SCN1A-216ENST00000637968 IGHV4-28A0A0C4DH34 117 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 SPATA3Q8NHX4 192 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 IGHV7-81A0A0B4J1V7 117 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 G3V318 75 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 SMIM29Q86T20 159 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 RETNLBQ9BQ08 111 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 C2CD3Q4AC94 2353 aa4.03□□□□□ -1.76
SCN1A-216ENST00000637968 LOC101927531A0A1B0GV80 90 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 ELOF1P60002 83 aaKnown RBP4.02□□□□□ -1.77
SCN1A-216ENST00000637968 LINC00575Q6W349 94 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 DEFB112Q30KQ8 113 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 FASNP49327 2511 aaKnown RBP4.02□□□□□ -1.77
SCN1A-216ENST00000637968 DEFB130BP0DP73 79 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 DEFB130AP0DP74 79 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 PLA2G2AP14555 144 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 PROK1P58294 105 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 OCR1Q9BZK8 76 aa4.02□□□□□ -1.77
SCN1A-216ENST00000637968 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-216ENST00000637968 LINC00167Q96N53 147 aa4.01□□□□□ -1.77
SCN1A-216ENST00000637968 C3orf84H3BNL1 204 aa4.01□□□□□ -1.77
SCN1A-216ENST00000637968 TLN1Q9Y490 2541 aaKnown RBP4.01□□□□□ -1.77
SCN1A-216ENST00000637968 LINC01006Q8NI28 216 aa4.01□□□□□ -1.77
SCN1A-216ENST00000637968 Q75L30 129 aa4.01□□□□□ -1.77
SCN1A-216ENST00000637968 EP400Q96L91 3159 aa4.01□□□□□ -1.77
SCN1A-216ENST00000637968 A6NN06 94 aa4□□□□□ -1.77
SCN1A-216ENST00000637968 DOPEY1Q5JWR5 2465 aa4□□□□□ -1.77
SCN1A-216ENST00000637968 IGHV4-30-2A0A087WSY4 118 aa4□□□□□ -1.77
SCN1A-216ENST00000637968 IGHV4-61A0A0C4DH41 118 aa4□□□□□ -1.77
SCN1A-216ENST00000637968 SPTBN4Q9H254 2564 aa4□□□□□ -1.77
SCN1A-216ENST00000637968 C9orf66Q5T8R8 295 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 CDK2AP2O75956 126 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 LY6G6DO95868 133 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 CDC42SE2Q9NRR3 84 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 ZNF462Q96JM2 2506 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 LOC100131303A0A0U1RQF7 123 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 IGKV4-1P06312 121 aa3.99□□□□□ -1.77
SCN1A-216ENST00000637968 Q8N9W7 124 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 C19orf84I3L1E1 186 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 LINC00313P59037 77 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 SEM1Q6ZVN7 128 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 Q8N9P0 234 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-216ENST00000637968 FSHBP01225 129 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 DEFB114Q30KQ6 69 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 UBE2DNLQ8IWF7 75 aa3.98□□□□□ -1.77
SCN1A-216ENST00000637968 RAI1Q7Z5J4 1906 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-216ENST00000637968 HIVEP3Q5T1R4 2406 aa3.97□□□□□ -1.77
SCN1A-216ENST00000637968 DNAJC9-AS1A6NH13 148 aa3.97□□□□□ -1.77
SCN1A-216ENST00000637968 PRR3P79522 188 aaKnown RBP3.97□□□□□ -1.77
SCN1A-216ENST00000637968 CEP295Q9C0D2 2601 aa3.97□□□□□ -1.77
SCN1A-216ENST00000637968 SPAG11AQ6PDA7 123 aa3.97□□□□□ -1.77
SCN1A-216ENST00000637968 ZFYVE26Q68DK2 2539 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 C10orf142B7Z368 130 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 MOBPQ13875 183 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 C10orf25Q5T742 122 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 DEFB105AQ8NG35 78 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 PRAC1Q96KF2 57 aa3.96□□□□□ -1.77
SCN1A-216ENST00000637968 M0R2N4 97 aa3.96□□□□□ -1.78
SCN1A-216ENST00000637968 COX17Q14061 63 aa3.96□□□□□ -1.78
SCN1A-216ENST00000637968 ANKRD11Q6UB99 2663 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-216ENST00000637968 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-216ENST00000637968 H3BUA1 57 aa3.96□□□□□ -1.78
SCN1A-216ENST00000637968 IGLV4-60A0A075B6I1 120 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 A8MU10 97 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 ABCA2Q9BZC7 2435 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 PIEZO2Q9H5I5 2752 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 WFDC13Q8IUB5 93 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 MUC4Q99102 2169 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 IGHV4-59P01825 116 aa3.95□□□□□ -1.78
SCN1A-216ENST00000637968 ANGP03950 147 aaKnown RBP3.95□□□□□ -1.78
SCN1A-216ENST00000637968 H3BPC8 53 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 Q8IZM0 81 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 Q9BRP9 147 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 H0Y9P7 68 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 WFDC10BQ8IUB3 73 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 KLK12Q9UKR0 248 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 LRRK2Q5S007 2527 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 CLPSL2Q6UWE3 100 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 COA5Q86WW8 74 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 SPANXA2-OT1Q8N9U9 137 aa3.94□□□□□ -1.78
SCN1A-216ENST00000637968 A0A096LPF7 62 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 JMJD1CQ15652 2540 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 ODF3BA8MYP8 253 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms