RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 XAGE1AQ9HD64 81 aa10.58□□□□□ -0.72
CIITA-215ENST00000637439 K7EMI3 77 aa10.57□□□□□ -0.72
CIITA-215ENST00000637439 HERVK_113P63121 156 aa10.57□□□□□ -0.72
CIITA-215ENST00000637439 ORMDL2Q53FV1 153 aa10.57□□□□□ -0.72
CIITA-215ENST00000637439 F8VRH5 84 aa10.56□□□□□ -0.72
CIITA-215ENST00000637439 CRYGAP11844 174 aa10.56□□□□□ -0.72
CIITA-215ENST00000637439 PAPPA-AS1Q5QFB9 102 aa10.56□□□□□ -0.72
CIITA-215ENST00000637439 ZC2HC1BQ5TFG8 222 aa10.56□□□□□ -0.72
CIITA-215ENST00000637439 MRPL55Q7Z7F7 128 aaKnown RBP10.56□□□□□ -0.72
CIITA-215ENST00000637439 BCE1O60756 84 aa10.55□□□□□ -0.72
CIITA-215ENST00000637439 TYMSOSQ8TAI1 123 aa10.55□□□□□ -0.72
CIITA-215ENST00000637439 IGIPA6NJ69 53 aa10.54□□□□□ -0.72
CIITA-215ENST00000637439 G0S2P27469 103 aa10.54□□□□□ -0.72
CIITA-215ENST00000637439 CXCL5P42830 114 aa10.54□□□□□ -0.72
CIITA-215ENST00000637439 A0A087X002 238 aa10.53□□□□□ -0.72
CIITA-215ENST00000637439 GEMIN7Q9H840 131 aaKnown RBP10.53□□□□□ -0.72
CIITA-215ENST00000637439 CDKN2A-AS1Q9UH64 79 aa10.53□□□□□ -0.72
CIITA-215ENST00000637439 NXT2Q9NPJ8 142 aaKnown RBP10.51□□□□□ -0.73
CIITA-215ENST00000637439 TIMM17AQ99595 171 aa10.5□□□□□ -0.73
CIITA-215ENST00000637439 LINC00167Q96N53 147 aa10.49□□□□□ -0.73
CIITA-215ENST00000637439 RPL37AP8A6NKH3 93 aa10.48□□□□□ -0.73
CIITA-215ENST00000637439 PNRC1Q12796 327 aaPredicted RBP10.48□□□□□ -0.73
CIITA-215ENST00000637439 ANAPC16Q96DE5 110 aa10.48□□□□□ -0.73
CIITA-215ENST00000637439 KRTAP9-2Q9BYQ4 174 aa10.48□□□□□ -0.73
CIITA-215ENST00000637439 MT-ND4LP03901 98 aa10.47□□□□□ -0.73
CIITA-215ENST00000637439 PDZD11Q5EBL8 140 aa10.46□□□□□ -0.73
CIITA-215ENST00000637439 TOMM6Q96B49 74 aa10.46□□□□□ -0.73
CIITA-215ENST00000637439 SMIM1B2RUZ4 78 aa10.45□□□□□ -0.74
CIITA-215ENST00000637439 UBE2AP49459 152 aa10.45□□□□□ -0.74
CIITA-215ENST00000637439 FAM229BQ4G0N7 80 aa10.45□□□□□ -0.74
CIITA-215ENST00000637439 COX7B2Q8TF08 81 aa10.45□□□□□ -0.74
CIITA-215ENST00000637439 IGLV5-37A0A075B6J1 123 aa10.44□□□□□ -0.74
CIITA-215ENST00000637439 GAGE10A6NGK3 116 aa10.44□□□□□ -0.74
CIITA-215ENST00000637439 ERASQ7Z444 233 aa10.44□□□□□ -0.74
CIITA-215ENST00000637439 NKAPP1Q8N9T2 125 aa10.44□□□□□ -0.74
CIITA-215ENST00000637439 TINCRA0A1B0GVN0 87 aa10.43□□□□□ -0.74
CIITA-215ENST00000637439 KRTAP13-2Q52LG2 175 aa10.43□□□□□ -0.74
CIITA-215ENST00000637439 KRTAP13-1Q8IUC0 172 aa10.43□□□□□ -0.74
CIITA-215ENST00000637439 ANAPC11Q9NYG5 84 aa10.43□□□□□ -0.74
CIITA-215ENST00000637439 LINC01549A6NIU2 74 aa10.42□□□□□ -0.74
CIITA-215ENST00000637439 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
CIITA-215ENST00000637439 LINC00304Q8N9R0 145 aa10.42□□□□□ -0.74
CIITA-215ENST00000637439 SCGB3A1Q96QR1 104 aa10.42□□□□□ -0.74
CIITA-215ENST00000637439 FAT4Q6V0I7 4981 aa10.42□□□□□ -0.74
CIITA-215ENST00000637439 IGLV5-45A0A087WSX0 123 aa10.41□□□□□ -0.74
CIITA-215ENST00000637439 CTAG1AP78358 180 aa10.41□□□□□ -0.74
CIITA-215ENST00000637439 RAB5BP61020 215 aa10.4□□□□□ -0.74
CIITA-215ENST00000637439 IGKV2D-26A0A0A0MRZ7 120 aa10.39□□□□□ -0.75
CIITA-215ENST00000637439 TPRXLQ17RH7 258 aa10.39□□□□□ -0.75
CIITA-215ENST00000637439 RETNLBQ9BQ08 111 aa10.39□□□□□ -0.75
CIITA-215ENST00000637439 CDIP1Q9H305 208 aa10.39□□□□□ -0.75
CIITA-215ENST00000637439 ATP5LO75964 103 aa10.37□□□□□ -0.75
CIITA-215ENST00000637439 MRPL18Q9H0U6 180 aaKnown RBP10.37□□□□□ -0.75
CIITA-215ENST00000637439 IGKV2-28A0A075B6P5 120 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 A0A1B0GVG6 124 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 IGKV2D-28P01615 120 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 SPINK8P0C7L1 97 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 ADCYAP1P18509 176 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 CST9LQ9H4G1 147 aa10.36□□□□□ -0.75
CIITA-215ENST00000637439 IGLV7-46A0A075B6I9 117 aa10.35□□□□□ -0.75
CIITA-215ENST00000637439 H3BRM9 83 aa10.35□□□□□ -0.75
CIITA-215ENST00000637439 KIAA1644Q3SXP7 199 aa10.35□□□□□ -0.75
CIITA-215ENST00000637439 PMVKQ15126 192 aa10.34□□□□□ -0.75
CIITA-215ENST00000637439 MUC17Q685J3 4493 aa10.34□□□□□ -0.75
CIITA-215ENST00000637439 LINC01546A6NGU7 62 aa10.33□□□□□ -0.76
CIITA-215ENST00000637439 FAM19A1Q7Z5A9 133 aa10.33□□□□□ -0.76
CIITA-215ENST00000637439 PFN2P35080 140 aa10.32□□□□□ -0.76
CIITA-215ENST00000637439 PRLHP81277 87 aa10.32□□□□□ -0.76
CIITA-215ENST00000637439 TMEM126AQ9H061 195 aa10.32□□□□□ -0.76
CIITA-215ENST00000637439 TRAV9-1A0A075B6T8 112 aa10.31□□□□□ -0.76
CIITA-215ENST00000637439 SCO1O75880 301 aa10.31□□□□□ -0.76
CIITA-215ENST00000637439 RPL24P83731 157 aaKnown RBP10.31□□□□□ -0.76
CIITA-215ENST00000637439 VPREB1P12018 145 aa10.3□□□□□ -0.76
CIITA-215ENST00000637439 RAB14P61106 215 aa10.3□□□□□ -0.76
CIITA-215ENST00000637439 COX17Q14061 63 aa10.29□□□□□ -0.76
CIITA-215ENST00000637439 GNB1LQ9BYB4 327 aa10.29□□□□□ -0.76
CIITA-215ENST00000637439 IGLV5-39A0A0G2JS06 123 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 TMEM238C9JI98 176 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 SPAG11AQ6PDA7 123 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 PLEKHB2Q96CS7 222 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 SND1-IT1Q9HBX3 110 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 ERG28Q9UKR5 140 aa10.28□□□□□ -0.76
CIITA-215ENST00000637439 M0R378 163 aa10.27□□□□□ -0.77
CIITA-215ENST00000637439 FA2HQ7L5A8 372 aa10.27□□□□□ -0.77
CIITA-215ENST00000637439 PPDPFQ9H3Y8 114 aa10.27□□□□□ -0.77
CIITA-215ENST00000637439 SMCO4Q9NRQ5 59 aa10.27□□□□□ -0.77
CIITA-215ENST00000637439 IGLC3P0DOY3 106 aa10.26□□□□□ -0.77
CIITA-215ENST00000637439 CBLN2Q8IUK8 224 aa10.26□□□□□ -0.77
CIITA-215ENST00000637439 SFTA2Q6UW10 78 aa10.25□□□□□ -0.77
CIITA-215ENST00000637439 C3orf22Q8N5N4 141 aa10.25□□□□□ -0.77
CIITA-215ENST00000637439 KRTAP9-6A0A140TA67 174 aa10.24□□□□□ -0.77
CIITA-215ENST00000637439 S100PP25815 95 aa10.24□□□□□ -0.77
CIITA-215ENST00000637439 COX19Q49B96 90 aa10.23□□□□□ -0.77
CIITA-215ENST00000637439 FP248Q71RG6 208 aaPredicted RBP10.23□□□□□ -0.77
CIITA-215ENST00000637439 ZNF22P17026 224 aaPredicted RBP10.22□□□□□ -0.77
CIITA-215ENST00000637439 NDUFA6P56556 154 aa10.22□□□□□ -0.77
CIITA-215ENST00000637439 HIGD2AQ9BW72 106 aa10.22□□□□□ -0.77
CIITA-215ENST00000637439 C4orf48Q5BLP8 95 aa10.21□□□□□ -0.77
CIITA-215ENST00000637439 ZNF625Q96I27 306 aaPredicted RBP10.2□□□□□ -0.78
CIITA-215ENST00000637439 SPRR4Q96PI1 79 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms