RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TTC32Q5I0X7 151 aa7.11□□□□□ -1.27
CLN3-248ENST00000636355 CFAP161Q6P656 301 aa7.11□□□□□ -1.27
CLN3-248ENST00000636355 KRTAP26-1Q6PEX3 210 aa7.11□□□□□ -1.27
CLN3-248ENST00000636355 COX17Q14061 63 aa7.1□□□□□ -1.27
CLN3-248ENST00000636355 C6orf226Q5I0X4 101 aa7.1□□□□□ -1.27
CLN3-248ENST00000636355 UBE2DNLQ8IWF7 75 aa7.1□□□□□ -1.27
CLN3-248ENST00000636355 TOMM7Q9P0U1 55 aa7.1□□□□□ -1.27
CLN3-248ENST00000636355 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.09□□□□□ -1.27
CLN3-248ENST00000636355 CKS1BP61024 79 aa7.09□□□□□ -1.27
CLN3-248ENST00000636355 SPAG11BQ08648 103 aa7.09□□□□□ -1.27
CLN3-248ENST00000636355 KIAA0087Q14695 138 aa7.09□□□□□ -1.27
CLN3-248ENST00000636355 MEIG1Q5JSS6 88 aa7.09□□□□□ -1.27
CLN3-248ENST00000636355 GVQW2A0A096LPI5 108 aaPredicted RBP7.08□□□□□ -1.28
CLN3-248ENST00000636355 A0A0B4J2C4 111 aa7.08□□□□□ -1.28
CLN3-248ENST00000636355 C2orf48Q96LS8 159 aa7.07□□□□□ -1.28
CLN3-248ENST00000636355 NHP2Q9NX24 153 aaKnown RBP7.07□□□□□ -1.28
CLN3-248ENST00000636355 ERG28Q9UKR5 140 aa7.07□□□□□ -1.28
CLN3-248ENST00000636355 IGKV2D-24A0A075B6R9 120 aa7.06□□□□□ -1.28
CLN3-248ENST00000636355 SMIM13P0DJ93 91 aa7.06□□□□□ -1.28
CLN3-248ENST00000636355 DYNC2H1Q8NCM8 4307 aaKnown RBP7.05□□□□□ -1.28
CLN3-248ENST00000636355 LOC107984156A0A0G2JMH3 177 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 TRBV30A0A0K0K1B3 111 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 TAX1BP3O14907 124 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 ADAMTSL4-AS1Q5T5F5 129 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 ARL17AQ8IVW1 177 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 LINC00308Q8TCZ7 52 aa7.05□□□□□ -1.28
CLN3-248ENST00000636355 A4D1N5 150 aa7.04□□□□□ -1.28
CLN3-248ENST00000636355 ZNF561-AS1K7EIQ3 104 aa7.04□□□□□ -1.28
CLN3-248ENST00000636355 MUSTN1Q8IVN3 82 aa7.04□□□□□ -1.28
CLN3-248ENST00000636355 C15orf56Q8N910 161 aa7.04□□□□□ -1.28
CLN3-248ENST00000636355 NTN5Q8WTR8 489 aaPredicted RBP7.04□□□□□ -1.28
CLN3-248ENST00000636355 WWC2-AS2Q96NR7 200 aa7.04□□□□□ -1.28
CLN3-248ENST00000636355 C9orf118A6NHY6 69 aa7.03□□□□□ -1.28
CLN3-248ENST00000636355 LYRM7Q5U5X0 104 aa7.03□□□□□ -1.28
CLN3-248ENST00000636355 MIR7-3HGQ8N6C7 128 aa7.03□□□□□ -1.28
CLN3-248ENST00000636355 Q9HAA7 133 aa7.03□□□□□ -1.28
CLN3-248ENST00000636355 DNAH7Q8WXX0 4024 aa7.03□□□□□ -1.28
CLN3-248ENST00000636355 LINC00158P58513 81 aa7.02□□□□□ -1.29
CLN3-248ENST00000636355 C2orf82Q6UX34 121 aa7.02□□□□□ -1.29
CLN3-248ENST00000636355 KRTAP17-1Q9BYP8 105 aa7.02□□□□□ -1.29
CLN3-248ENST00000636355 NBDYA0A0U1RRE5 68 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 A0A1B0GV90 55 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 K7ERJ3 54 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 CFC1BP0CG36 223 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 CFC1P0CG37 223 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 RNF151Q2KHN1 245 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 RAB37Q96AX2 223 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 PRO1854Q9UHT4 67 aa7.01□□□□□ -1.29
CLN3-248ENST00000636355 NDUFC2O95298 119 aa7□□□□□ -1.29
CLN3-248ENST00000636355 C14orf177Q52M58 125 aa7□□□□□ -1.29
CLN3-248ENST00000636355 DAND5Q8N907 189 aa7□□□□□ -1.29
CLN3-248ENST00000636355 CAMK2N2Q96S95 79 aa7□□□□□ -1.29
CLN3-248ENST00000636355 KRTAP1-5Q9BYS1 174 aa7□□□□□ -1.29
CLN3-248ENST00000636355 A0A1W2PPM0 123 aa6.99□□□□□ -1.29
CLN3-248ENST00000636355 PFN2P35080 140 aa6.99□□□□□ -1.29
CLN3-248ENST00000636355 SOSTDC1Q6X4U4 206 aa6.99□□□□□ -1.29
CLN3-248ENST00000636355 PGPEP1Q9NXJ5 209 aa6.99□□□□□ -1.29
CLN3-248ENST00000636355 CSMD3Q7Z407 3707 aa6.99□□□□□ -1.29
CLN3-248ENST00000636355 TRAV13-2A0A0B4J235 113 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 USP17L23D6RBM5 183 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 C3orf84H3BNL1 204 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 FABP2P12104 132 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 UNQ6190/PRO20217Q6UXQ8 127 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 SND1-IT1Q9HBX3 110 aa6.98□□□□□ -1.29
CLN3-248ENST00000636355 TENM2Q9NT68 2774 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 H3BUT2 72 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 TSPAN13O95857 204 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 SYCNQ0VAF6 134 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 HIGD2BQ4VC39 106 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 C6orf223Q8N319 242 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 CARD19Q96LW7 228 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 C6orf48Q9UBA6 75 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 PKIGQ9Y2B9 76 aa6.97□□□□□ -1.29
CLN3-248ENST00000636355 A0A0U1RRA0 63 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 NDUFC2-KCTD14E9PQ53 114 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 PSCAO43653 123 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 TLX1NBP0CAT3 122 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 C10orf25Q5T742 122 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 GTF2H5Q6ZYL4 71 aa6.96□□□□□ -1.3
CLN3-248ENST00000636355 EIF4EBP3O60516 100 aaPredicted RBP6.95□□□□□ -1.3
CLN3-248ENST00000636355 NPC2P61916 151 aa6.95□□□□□ -1.3
CLN3-248ENST00000636355 CNBPP62633 177 aaKnown RBP6.95□□□□□ -1.3
CLN3-248ENST00000636355 VAMP3Q15836 100 aa6.95□□□□□ -1.3
CLN3-248ENST00000636355 Q6ZRU5 148 aa6.95□□□□□ -1.3
CLN3-248ENST00000636355 RYR3Q15413 4870 aa6.95□□□□□ -1.3
CLN3-248ENST00000636355 KMT2CQ8NEZ4 4911 aaKnown RBP6.95□□□□□ -1.3
CLN3-248ENST00000636355 TRBV20-1A0A075B6N2 111 aa6.94□□□□□ -1.3
CLN3-248ENST00000636355 TRBV10-2A0A0K0K1G8 114 aa6.94□□□□□ -1.3
CLN3-248ENST00000636355 K7EP34 96 aa6.94□□□□□ -1.3
CLN3-248ENST00000636355 RPL13AP40429 203 aaKnown RBP6.94□□□□□ -1.3
CLN3-248ENST00000636355 Q6ZR54 194 aa6.94□□□□□ -1.3
CLN3-248ENST00000636355 COX6CP09669 75 aa6.93□□□□□ -1.3
CLN3-248ENST00000636355 Q1RN00 199 aa6.93□□□□□ -1.3
CLN3-248ENST00000636355 C9orf116Q5BN46 136 aaPredicted RBP6.93□□□□□ -1.3
CLN3-248ENST00000636355 CASC10Q5T4H9 136 aa6.93□□□□□ -1.3
CLN3-248ENST00000636355 Q6ZRN7 208 aaPredicted RBP6.93□□□□□ -1.3
CLN3-248ENST00000636355 LINC00526Q96FQ7 95 aa6.93□□□□□ -1.3
CLN3-248ENST00000636355 DNAH1Q9P2D7 4330 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 IGKV2-28A0A075B6P5 120 aa6.92□□□□□ -1.3
CLN3-248ENST00000636355 IGKV2D-28P01615 120 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms