RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 LBHQ53QV2 105 aaPredicted RBP7.22□□□□□ -1.25
UPF3B-204ENST00000619445 C2orf82Q6UX34 121 aa7.22□□□□□ -1.25
UPF3B-204ENST00000619445 CTDSP1Q9GZU7 261 aa7.22□□□□□ -1.25
UPF3B-204ENST00000619445 IGIPA6NJ69 53 aa7.21□□□□□ -1.25
UPF3B-204ENST00000619445 NUPR1O60356 82 aa7.21□□□□□ -1.25
UPF3B-204ENST00000619445 PRR26Q8N8Z3 221 aa7.21□□□□□ -1.25
UPF3B-204ENST00000619445 TIMM17AQ99595 171 aa7.21□□□□□ -1.25
UPF3B-204ENST00000619445 ALKBH7Q9BT30 221 aaPredicted RBP7.21□□□□□ -1.25
UPF3B-204ENST00000619445 GEMIN7Q9H840 131 aaKnown RBP7.21□□□□□ -1.25
UPF3B-204ENST00000619445 TOMM7Q9P0U1 55 aa7.21□□□□□ -1.25
UPF3B-204ENST00000619445 CARHSP1Q9Y2V2 147 aaKnown RBP7.21□□□□□ -1.25
UPF3B-204ENST00000619445 C9orf129Q5T035 196 aaKnown RBP7.2□□□□□ -1.26
UPF3B-204ENST00000619445 LINC00173Q6ZV60 143 aa7.2□□□□□ -1.26
UPF3B-204ENST00000619445 F8VRH5 84 aa7.2□□□□□ -1.26
UPF3B-204ENST00000619445 TP73-AS1Q9UF72 201 aa7.2□□□□□ -1.26
UPF3B-204ENST00000619445 TRAV9-1A0A075B6T8 112 aa7.19□□□□□ -1.26
UPF3B-204ENST00000619445 ZNF861PO60384 105 aa7.19□□□□□ -1.26
UPF3B-204ENST00000619445 KRTAP11-1Q8IUC1 163 aa7.19□□□□□ -1.26
UPF3B-204ENST00000619445 KRTAP7-1Q8IUC3 87 aa7.19□□□□□ -1.26
UPF3B-204ENST00000619445 TOMM6Q96B49 74 aa7.19□□□□□ -1.26
UPF3B-204ENST00000619445 KRTAP1-4P0C5Y4 121 aa7.18□□□□□ -1.26
UPF3B-204ENST00000619445 ERASQ7Z444 233 aa7.18□□□□□ -1.26
UPF3B-204ENST00000619445 LCE2CQ5TA81 110 aa7.17□□□□□ -1.26
UPF3B-204ENST00000619445 CDKN2A-AS1Q9UH64 79 aa7.17□□□□□ -1.26
UPF3B-204ENST00000619445 C22orf24Q9Y442 160 aa7.17□□□□□ -1.26
UPF3B-204ENST00000619445 RPL28P46779 137 aaKnown RBP7.16□□□□□ -1.26
UPF3B-204ENST00000619445 PDZD11Q5EBL8 140 aa7.16□□□□□ -1.26
UPF3B-204ENST00000619445 ZC2HC1BQ5TFG8 222 aa7.16□□□□□ -1.26
UPF3B-204ENST00000619445 SCGB3A1Q96QR1 104 aa7.16□□□□□ -1.26
UPF3B-204ENST00000619445 TINCRA0A1B0GVN0 87 aa7.15□□□□□ -1.26
UPF3B-204ENST00000619445 COX19Q49B96 90 aa7.15□□□□□ -1.26
UPF3B-204ENST00000619445 UQCC3Q6UW78 93 aa7.15□□□□□ -1.26
UPF3B-204ENST00000619445 MRPL55Q7Z7F7 128 aaKnown RBP7.15□□□□□ -1.26
UPF3B-204ENST00000619445 LINC00469Q8N7U9 141 aa7.15□□□□□ -1.26
UPF3B-204ENST00000619445 S100PP25815 95 aa7.14□□□□□ -1.27
UPF3B-204ENST00000619445 XAGE1AQ9HD64 81 aa7.14□□□□□ -1.27
UPF3B-204ENST00000619445 IGLV5-45A0A087WSX0 123 aa7.13□□□□□ -1.27
UPF3B-204ENST00000619445 BCE1O60756 84 aa7.13□□□□□ -1.27
UPF3B-204ENST00000619445 CLLU1Q5K131 121 aa7.13□□□□□ -1.27
UPF3B-204ENST00000619445 COX7B2Q8TF08 81 aa7.13□□□□□ -1.27
UPF3B-204ENST00000619445 GNB1LQ9BYB4 327 aa7.13□□□□□ -1.27
UPF3B-204ENST00000619445 MRPL18Q9H0U6 180 aaKnown RBP7.13□□□□□ -1.27
UPF3B-204ENST00000619445 LINC01546A6NGU7 62 aa7.12□□□□□ -1.27
UPF3B-204ENST00000619445 SMIM1B2RUZ4 78 aa7.12□□□□□ -1.27
UPF3B-204ENST00000619445 H3BRM9 83 aa7.12□□□□□ -1.27
UPF3B-204ENST00000619445 CRYGAP11844 174 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 PMVKQ15126 192 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 PRR4Q16378 134 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 KIAA1644Q3SXP7 199 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 NKAPP1Q8N9T2 125 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 CST9LQ9H4G1 147 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 SMCO4Q9NRQ5 59 aa7.1□□□□□ -1.27
UPF3B-204ENST00000619445 IGLV5-37A0A075B6J1 123 aa7.09□□□□□ -1.27
UPF3B-204ENST00000619445 TMEM218A2RU14 115 aa7.09□□□□□ -1.27
UPF3B-204ENST00000619445 ATP5LO75964 103 aa7.09□□□□□ -1.27
UPF3B-204ENST00000619445 FA2HQ7L5A8 372 aa7.09□□□□□ -1.27
UPF3B-204ENST00000619445 SFTA2Q6UW10 78 aa7.08□□□□□ -1.28
UPF3B-204ENST00000619445 LINC00167Q96N53 147 aa7.08□□□□□ -1.28
UPF3B-204ENST00000619445 SEC11CQ9BY50 192 aa7.08□□□□□ -1.28
UPF3B-204ENST00000619445 ADCYAP1P18509 176 aa7.08□□□□□ -1.28
UPF3B-204ENST00000619445 A0A0U1RQV1 116 aa7.07□□□□□ -1.28
UPF3B-204ENST00000619445 UBE2AP49459 152 aa7.07□□□□□ -1.28
UPF3B-204ENST00000619445 TYMSOSQ8TAI1 123 aa7.07□□□□□ -1.28
UPF3B-204ENST00000619445 LPAP08519 4548 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 SPINK8P0C7L1 97 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 CTAG1AP78358 180 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 FABP9Q0Z7S8 132 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 COX17Q14061 63 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 FAM229BQ4G0N7 80 aa7.06□□□□□ -1.28
UPF3B-204ENST00000619445 LCE2AQ5TA79 106 aaPredicted RBP7.06□□□□□ -1.28
UPF3B-204ENST00000619445 RPL37AP8A6NKH3 93 aa7.05□□□□□ -1.28
UPF3B-204ENST00000619445 IGLC3P0DOY3 106 aa7.05□□□□□ -1.28
UPF3B-204ENST00000619445 RAB5BP61020 215 aa7.05□□□□□ -1.28
UPF3B-204ENST00000619445 RPL24P83731 157 aaKnown RBP7.05□□□□□ -1.28
UPF3B-204ENST00000619445 RHEBQ15382 184 aa7.05□□□□□ -1.28
UPF3B-204ENST00000619445 IGLV5-39A0A0G2JS06 123 aa7.04□□□□□ -1.28
UPF3B-204ENST00000619445 GAGE10A6NGK3 116 aa7.04□□□□□ -1.28
UPF3B-204ENST00000619445 A0A087X002 238 aa7.03□□□□□ -1.28
UPF3B-204ENST00000619445 KRTAP13-1Q8IUC0 172 aa7.03□□□□□ -1.28
UPF3B-204ENST00000619445 TSPAN13O95857 204 aa7.02□□□□□ -1.29
UPF3B-204ENST00000619445 HBDP02042 147 aa7.01□□□□□ -1.29
UPF3B-204ENST00000619445 PFN2P35080 140 aa7.01□□□□□ -1.29
UPF3B-204ENST00000619445 NDUFA6P56556 154 aa7.01□□□□□ -1.29
UPF3B-204ENST00000619445 ERG28Q9UKR5 140 aa7.01□□□□□ -1.29
UPF3B-204ENST00000619445 IGKV2-28A0A075B6P5 120 aa7□□□□□ -1.29
UPF3B-204ENST00000619445 IGKV2D-26A0A0A0MRZ7 120 aa7□□□□□ -1.29
UPF3B-204ENST00000619445 IGKV2D-28P01615 120 aa7□□□□□ -1.29
UPF3B-204ENST00000619445 LINC00614P0C842 121 aa7□□□□□ -1.29
UPF3B-204ENST00000619445 ZNF22P17026 224 aaPredicted RBP7□□□□□ -1.29
UPF3B-204ENST00000619445 SND1-IT1Q9HBX3 110 aa7□□□□□ -1.29
UPF3B-204ENST00000619445 C10orf91Q5T1B1 145 aa6.99□□□□□ -1.29
UPF3B-204ENST00000619445 LINC00304Q8N9R0 145 aa6.99□□□□□ -1.29
UPF3B-204ENST00000619445 RPS10P5Q9NQ39 176 aa6.99□□□□□ -1.29
UPF3B-204ENST00000619445 VPREB1P12018 145 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 FAM19A1Q7Z5A9 133 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 COMMD7Q86VX2 200 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 C18orf32Q8TCD1 76 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 TMEM126AQ9H061 195 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 TRAPPC1Q9Y5R8 145 aa6.98□□□□□ -1.29
UPF3B-204ENST00000619445 TMEM170BQ5T4T1 132 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms