RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TIMM17BO60830 172 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 RMI2Q96E14 147 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 LINC00526Q96FQ7 95 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 C6orf223Q8N319 242 aa9.43□□□□□ -0.9
USP39-220ENST00000613444 C3orf84H3BNL1 204 aa9.43□□□□□ -0.9
USP39-220ENST00000613444 SFTA2Q6UW10 78 aa9.43□□□□□ -0.9
USP39-220ENST00000613444 HIST1H4GQ99525 98 aa9.43□□□□□ -0.9
USP39-220ENST00000613444 TM2D2Q9BX73 214 aa9.43□□□□□ -0.9
USP39-220ENST00000613444 TMEM238C9JI98 176 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 CXCL5P42830 114 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 TTC32Q5I0X7 151 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 CFAP161Q6P656 301 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 CEND1Q8N111 149 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 NTN5Q8WTR8 489 aaPredicted RBP9.42□□□□□ -0.9
USP39-220ENST00000613444 DNAH2Q9P225 4427 aa9.42□□□□□ -0.9
USP39-220ENST00000613444 SPANXDQ9BXN6 97 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 SPANXCQ9NY87 97 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 GVQW2A0A096LPI5 108 aaPredicted RBP9.41□□□□□ -0.9
USP39-220ENST00000613444 FXYD2P54710 66 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 CKS1BP61024 79 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 SRSF9Q13242 221 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP39-220ENST00000613444 HIGD2BQ4VC39 106 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 C10orf25Q5T742 122 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 COX11Q9Y6N1 276 aa9.41□□□□□ -0.9
USP39-220ENST00000613444 SMIM13P0DJ93 91 aa9.4□□□□□ -0.9
USP39-220ENST00000613444 GCSHP23434 173 aa9.4□□□□□ -0.9
USP39-220ENST00000613444 BATFQ16520 125 aa9.4□□□□□ -0.9
USP39-220ENST00000613444 UNQ6190/PRO20217Q6UXQ8 127 aa9.4□□□□□ -0.91
USP39-220ENST00000613444 DAND5Q8N907 189 aa9.4□□□□□ -0.91
USP39-220ENST00000613444 MEIG1Q5JSS6 88 aa9.39□□□□□ -0.91
USP39-220ENST00000613444 A0A0U1RRA0 63 aa9.39□□□□□ -0.91
USP39-220ENST00000613444 USP17L23D6RBM5 183 aa9.39□□□□□ -0.91
USP39-220ENST00000613444 EIF4EBP3O60516 100 aaPredicted RBP9.39□□□□□ -0.91
USP39-220ENST00000613444 CIRBPQ14011 172 aaKnown RBP9.39□□□□□ -0.91
USP39-220ENST00000613444 Q6ZR54 194 aa9.39□□□□□ -0.91
USP39-220ENST00000613444 Q6ZRN7 208 aaPredicted RBP9.39□□□□□ -0.91
USP39-220ENST00000613444 LINC00476Q8WZB0 136 aa9.39□□□□□ -0.91
USP39-220ENST00000613444 Q6ZVH6 145 aa9.38□□□□□ -0.91
USP39-220ENST00000613444 ERG28Q9UKR5 140 aa9.38□□□□□ -0.91
USP39-220ENST00000613444 A6NJY4 79 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 ZNF561-AS1K7EIQ3 104 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 MUSTN1Q8IVN3 82 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 C2orf48Q96LS8 159 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 HYDINQ4G0P3 5121 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 M0R2N4 97 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 WFDC2Q14508 124 aa9.37□□□□□ -0.91
USP39-220ENST00000613444 C9orf116Q5BN46 136 aaPredicted RBP9.37□□□□□ -0.91
USP39-220ENST00000613444 PTTG1IPP53801 180 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 C6orf48Q9UBA6 75 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 LY6G6CO95867 125 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 PFN2P35080 140 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 SOSTDC1Q6X4U4 206 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 MIR7-3HGQ8N6C7 128 aa9.36□□□□□ -0.91
USP39-220ENST00000613444 SLPIP03973 132 aa9.35□□□□□ -0.91
USP39-220ENST00000613444 LINC00308Q8TCZ7 52 aa9.35□□□□□ -0.91
USP39-220ENST00000613444 LECT2O14960 151 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 LINC00158P58513 81 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 NPC2P61916 151 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 Q6ZRU5 148 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 CAMK2N2Q96S95 79 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 F8WDY8 70 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 IFITM1P13164 125 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 COX17Q14061 63 aa9.34□□□□□ -0.91
USP39-220ENST00000613444 LBHQ53QV2 105 aaPredicted RBP9.33□□□□□ -0.92
USP39-220ENST00000613444 SACSQ9NZJ4 4579 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 FRAS1Q86XX4 4008 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 TRBV30A0A0K0K1B3 111 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 A0A1B0GWB2 263 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 A4D1N5 150 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 PSCAO43653 123 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 COL5A1-AS1Q5SY13 56 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 PPDPFQ9H3Y8 114 aa9.33□□□□□ -0.92
USP39-220ENST00000613444 LRCOL1A6NCL2 159 aa9.32□□□□□ -0.92
USP39-220ENST00000613444 DNAH17Q9UFH2 4485 aa9.32□□□□□ -0.92
USP39-220ENST00000613444 RPL24P83731 157 aaKnown RBP9.31□□□□□ -0.92
USP39-220ENST00000613444 SYCNQ0VAF6 134 aa9.31□□□□□ -0.92
USP39-220ENST00000613444 NHP2Q9NX24 153 aaKnown RBP9.31□□□□□ -0.92
USP39-220ENST00000613444 A6NDN8 102 aa9.31□□□□□ -0.92
USP39-220ENST00000613444 K7ERJ3 54 aa9.31□□□□□ -0.92
USP39-220ENST00000613444 CFC1BP0CG36 223 aa9.3□□□□□ -0.92
USP39-220ENST00000613444 CFC1P0CG37 223 aa9.3□□□□□ -0.92
USP39-220ENST00000613444 LOC107984156A0A0G2JMH3 177 aa9.29□□□□□ -0.92
USP39-220ENST00000613444 TAX1BP3O14907 124 aa9.29□□□□□ -0.92
USP39-220ENST00000613444 ARL17AQ8IVW1 177 aa9.29□□□□□ -0.92
USP39-220ENST00000613444 CARD19Q96LW7 228 aa9.28□□□□□ -0.92
USP39-220ENST00000613444 SND1-IT1Q9HBX3 110 aa9.28□□□□□ -0.92
USP39-220ENST00000613444 HECTD4Q9Y4D8 3996 aa9.28□□□□□ -0.92
USP39-220ENST00000613444 RNF151Q2KHN1 245 aa9.27□□□□□ -0.92
USP39-220ENST00000613444 COPS9Q8WXC6 57 aa9.27□□□□□ -0.92
USP39-220ENST00000613444 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.26□□□□□ -0.93
USP39-220ENST00000613444 A0A0B4J2C4 111 aa9.26□□□□□ -0.93
USP39-220ENST00000613444 NDUFC2-KCTD14E9PQ53 114 aa9.26□□□□□ -0.93
USP39-220ENST00000613444 CNBPP62633 177 aaKnown RBP9.26□□□□□ -0.93
USP39-220ENST00000613444 C14orf177Q52M58 125 aa9.25□□□□□ -0.93
USP39-220ENST00000613444 C1orf134Q5TEV5 83 aa9.25□□□□□ -0.93
USP39-220ENST00000613444 RAB37Q96AX2 223 aa9.25□□□□□ -0.93
USP39-220ENST00000613444 TLX1NBP0CAT3 122 aa9.24□□□□□ -0.93
USP39-220ENST00000613444 Q6ZRP5 223 aa9.24□□□□□ -0.93
USP39-220ENST00000613444 Q8NDZ9 215 aa9.24□□□□□ -0.93
USP39-220ENST00000613444 IGKV2-28A0A075B6P5 120 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms