RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 IGKV2D-24A0A075B6R9 120 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 GAGE12JA6NER3 117 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 IBA57-AS1B1ANH7 110 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 TMEM238C9JI98 176 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 M0QY20 66 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 GNRH2O43555 120 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 UBE2D1P51668 147 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 FXYD2P54710 66 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 GAGE4Q13068 117 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 GAGE5Q13069 117 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 ZNF56Q15929 161 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 GAGE13Q4V321 117 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 LINC01556Q5JQF7 62 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 COPS9Q8WXC6 57 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 PLEKHB2Q96CS7 222 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 RMI2Q96E14 147 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 RPL39LQ96EH5 51 aaKnown RBP3.47□□□□□ -1.85
VRK3-226ENST00000602029 TIMM21Q9BVV7 248 aa3.47□□□□□ -1.85
VRK3-226ENST00000602029 NHP2Q9NX24 153 aaKnown RBP3.47□□□□□ -1.85
VRK3-226ENST00000602029 TRAV8-3A0A0A6YYJ7 113 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.46□□□□□ -1.86
VRK3-226ENST00000602029 LRCOL1A6NCL2 159 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 ZNF815PA8K554 130 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 F5H697 171 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 LEPROTO15243 131 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 RS1O15537 224 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 SCGB1A1P11684 91 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 MRPS36P82909 103 aaKnown RBP3.46□□□□□ -1.86
VRK3-226ENST00000602029 RPL24P83731 157 aaKnown RBP3.46□□□□□ -1.86
VRK3-226ENST00000602029 SCGB1D4Q6XE38 83 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 SLC25A29Q8N8R3 303 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 VPS25Q9BRG1 176 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 GTSF1LQ9H1H1 148 aa3.46□□□□□ -1.86
VRK3-226ENST00000602029 A0A0B4J2C4 111 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 A0A0J9YXY3 114 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 TRBV10-1A0A0K0K1A3 114 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 KRTAP29-1A8MX34 341 aaPredicted RBP3.45□□□□□ -1.86
VRK3-226ENST00000602029 J3QQQ9 107 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 TIMM17BO60830 172 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 TSHBP01222 138 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 LGALS3P17931 250 aaKnown RBP3.45□□□□□ -1.86
VRK3-226ENST00000602029 COTL1Q14019 142 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 LELP1Q5T871 98 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 SCXQ7RTU7 201 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 FAM19A3Q7Z5A8 133 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 Q8N3U1 123 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 UBE2WQ96B02 151 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 DPH3Q96FX2 82 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 LINC01600Q96MT4 127 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 AMELXQ99217 191 aa3.45□□□□□ -1.86
VRK3-226ENST00000602029 CSDC2Q9Y534 153 aaKnown RBP3.45□□□□□ -1.86
VRK3-226ENST00000602029 TINCRA0A1B0GVN0 87 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 TMEM223A0PJW6 202 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 TMEM262E9PQX1 116 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 H3BMG7 143 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 H7C423 109 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 CRPP02741 224 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 PCP4P48539 62 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 UBE2D3P61077 147 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 RPL37AP61513 92 aaKnown RBP3.44□□□□□ -1.86
VRK3-226ENST00000602029 UBE2D2P62837 147 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 SRSF9Q13242 221 aaKnown RBP eCLIP3.44□□□□□ -1.86
VRK3-226ENST00000602029 WFDC2Q14508 124 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 FAM74A4Q5TZK3 123 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 DAZ4Q86SG3 579 aaKnown RBP3.44□□□□□ -1.86
VRK3-226ENST00000602029 RAB37Q96AX2 223 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 SPANXDQ9BXN6 97 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 DAZ3Q9NR90 486 aaKnown RBP3.44□□□□□ -1.86
VRK3-226ENST00000602029 SPANXCQ9NY87 97 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 KLK12Q9UKR0 248 aa3.44□□□□□ -1.86
VRK3-226ENST00000602029 IGLV4-3A0A075B6K6 122 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 IGLV5-45A0A087WSX0 123 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 A0A087WWL8 130 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 TRBV6-4A0A1B0GX49 114 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 OXTP01178 125 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 IFITM1P13164 125 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 ZNF22P17026 224 aaPredicted RBP3.43□□□□□ -1.86
VRK3-226ENST00000602029 TIRAPP58753 221 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 TMEM170BQ5T4T1 132 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 CFAP126Q5VTH2 177 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 SFTA2Q6UW10 78 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 C1orf43Q9BWL3 253 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 PRO1854Q9UHT4 67 aa3.43□□□□□ -1.86
VRK3-226ENST00000602029 IGHV1-58A0A0C4DH39 117 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 RPL39P62891 51 aaKnown RBP3.42□□□□□ -1.86
VRK3-226ENST00000602029 HERVK_113P63121 156 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 C14orf177Q52M58 125 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 CIRBP-AS1Q8TBR5 109 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 TTTY13Q9BZ97 58 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 MUC2Q02817 5179 aa3.42□□□□□ -1.86
VRK3-226ENST00000602029 TRBV30A0A0K0K1B3 111 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 TSPAN13O95857 204 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 COX6CP09669 75 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 HERV-K104P63124 156 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 RPL36AP83881 106 aaKnown RBP3.41□□□□□ -1.86
VRK3-226ENST00000602029 CIRBPQ14011 172 aaKnown RBP3.41□□□□□ -1.86
VRK3-226ENST00000602029 TEN1Q86WV5 123 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 RPL36ALQ969Q0 106 aaKnown RBP3.41□□□□□ -1.86
VRK3-226ENST00000602029 CHCHD5Q9BSY4 110 aa3.41□□□□□ -1.86
VRK3-226ENST00000602029 JPT2Q9H910 190 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms