RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 MRPL35Q9NZE8 188 aaKnown RBP9.38□□□□□ -0.91
LIG1-214ENST00000597146 TOMM7Q9P0U1 55 aa9.38□□□□□ -0.91
LIG1-214ENST00000597146 TRAPPC1Q9Y5R8 145 aa9.38□□□□□ -0.91
LIG1-214ENST00000597146 SNAPINO95295 136 aa9.37□□□□□ -0.91
LIG1-214ENST00000597146 CKS1BP61024 79 aa9.37□□□□□ -0.91
LIG1-214ENST00000597146 ERASQ7Z444 233 aa9.37□□□□□ -0.91
LIG1-214ENST00000597146 AMELXQ99217 191 aa9.37□□□□□ -0.91
LIG1-214ENST00000597146 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.36□□□□□ -0.91
LIG1-214ENST00000597146 HERVK_113P63121 156 aa9.36□□□□□ -0.91
LIG1-214ENST00000597146 SVBPQ8N300 66 aa9.36□□□□□ -0.91
LIG1-214ENST00000597146 TIMM17AQ99595 171 aa9.36□□□□□ -0.91
LIG1-214ENST00000597146 MUC17Q685J3 4493 aa9.36□□□□□ -0.91
LIG1-214ENST00000597146 GAGE2EQ4V326 116 aa9.35□□□□□ -0.91
LIG1-214ENST00000597146 C9orf116Q5BN46 136 aaPredicted RBP9.35□□□□□ -0.91
LIG1-214ENST00000597146 LINC01561Q8N1V8 128 aa9.35□□□□□ -0.91
LIG1-214ENST00000597146 GAGE2DQ9UEU5 116 aa9.35□□□□□ -0.91
LIG1-214ENST00000597146 NDUFA6P56556 154 aa9.34□□□□□ -0.91
LIG1-214ENST00000597146 C10orf25Q5T742 122 aa9.34□□□□□ -0.91
LIG1-214ENST00000597146 C1orf137Q5JT78 98 aa9.33□□□□□ -0.92
LIG1-214ENST00000597146 LINC00173Q6ZV60 143 aa9.33□□□□□ -0.92
LIG1-214ENST00000597146 TRBV30A0A0K0K1B3 111 aa9.32□□□□□ -0.92
LIG1-214ENST00000597146 A0A1W2PNN7 141 aa9.32□□□□□ -0.92
LIG1-214ENST00000597146 LCE2DQ5TA82 110 aaPredicted RBP9.32□□□□□ -0.92
LIG1-214ENST00000597146 C2orf82Q6UX34 121 aa9.32□□□□□ -0.92
LIG1-214ENST00000597146 LINC00469Q8N7U9 141 aa9.32□□□□□ -0.92
LIG1-214ENST00000597146 C6orf48Q9UBA6 75 aa9.32□□□□□ -0.92
LIG1-214ENST00000597146 RAB5BP61020 215 aa9.31□□□□□ -0.92
LIG1-214ENST00000597146 KIAA0087Q14695 138 aa9.31□□□□□ -0.92
LIG1-214ENST00000597146 CDKN2A-AS1Q9UH64 79 aa9.31□□□□□ -0.92
LIG1-214ENST00000597146 LINC00614P0C842 121 aa9.3□□□□□ -0.92
LIG1-214ENST00000597146 PMVKQ15126 192 aa9.3□□□□□ -0.92
LIG1-214ENST00000597146 CST9LQ9H4G1 147 aa9.3□□□□□ -0.92
LIG1-214ENST00000597146 TLX1NBP0CAT3 122 aa9.29□□□□□ -0.92
LIG1-214ENST00000597146 FAM19A3Q7Z5A8 133 aa9.29□□□□□ -0.92
LIG1-214ENST00000597146 DIRC1Q969H9 104 aa9.29□□□□□ -0.92
LIG1-214ENST00000597146 IGLV1-50A0A075B6I6 118 aa9.28□□□□□ -0.92
LIG1-214ENST00000597146 TINCRA0A1B0GVN0 87 aa9.28□□□□□ -0.92
LIG1-214ENST00000597146 LINC01546A6NGU7 62 aa9.28□□□□□ -0.92
LIG1-214ENST00000597146 PHF5AQ7RTV0 110 aaKnown RBP9.28□□□□□ -0.92
LIG1-214ENST00000597146 FAM19A5Q7Z5A7 132 aaPredicted RBP9.28□□□□□ -0.92
LIG1-214ENST00000597146 Q8IZM0 81 aa9.28□□□□□ -0.92
LIG1-214ENST00000597146 NDUFC2-KCTD14E9PQ53 114 aa9.27□□□□□ -0.93
LIG1-214ENST00000597146 H0Y9J4 135 aa9.27□□□□□ -0.93
LIG1-214ENST00000597146 H3BRM9 83 aa9.27□□□□□ -0.93
LIG1-214ENST00000597146 KRTAP1-4P0C5Y4 121 aa9.27□□□□□ -0.93
LIG1-214ENST00000597146 IGLV7-43P04211 117 aa9.26□□□□□ -0.93
LIG1-214ENST00000597146 UBE2BP63146 152 aa9.26□□□□□ -0.93
LIG1-214ENST00000597146 C18orf32Q8TCD1 76 aa9.26□□□□□ -0.93
LIG1-214ENST00000597146 FAM168BA1KXE4 195 aa9.25□□□□□ -0.93
LIG1-214ENST00000597146 CXCL5P42830 114 aa9.25□□□□□ -0.93
LIG1-214ENST00000597146 PDZD11Q5EBL8 140 aa9.25□□□□□ -0.93
LIG1-214ENST00000597146 COX7B2Q8TF08 81 aa9.25□□□□□ -0.93
LIG1-214ENST00000597146 F8VRH5 84 aa9.24□□□□□ -0.93
LIG1-214ENST00000597146 ATP5LO75964 103 aa9.24□□□□□ -0.93
LIG1-214ENST00000597146 HBDP02042 147 aa9.24□□□□□ -0.93
LIG1-214ENST00000597146 TSPAN13O95857 204 aa9.23□□□□□ -0.93
LIG1-214ENST00000597146 SPINK8P0C7L1 97 aa9.23□□□□□ -0.93
LIG1-214ENST00000597146 PMCHL1Q16048 86 aa9.23□□□□□ -0.93
LIG1-214ENST00000597146 M0QXV9 152 aa9.22□□□□□ -0.93
LIG1-214ENST00000597146 BAGE3Q86Y29 109 aa9.22□□□□□ -0.93
LIG1-214ENST00000597146 SMIM1B2RUZ4 78 aa9.21□□□□□ -0.94
LIG1-214ENST00000597146 KRTAP11-1Q8IUC1 163 aa9.21□□□□□ -0.94
LIG1-214ENST00000597146 XAGE1AQ9HD64 81 aa9.21□□□□□ -0.94
LIG1-214ENST00000597146 LBHQ53QV2 105 aaPredicted RBP9.2□□□□□ -0.94
LIG1-214ENST00000597146 IGLV5-45A0A087WSX0 123 aa9.18□□□□□ -0.94
LIG1-214ENST00000597146 ATP6V1G1O75348 118 aa9.18□□□□□ -0.94
LIG1-214ENST00000597146 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
LIG1-214ENST00000597146 C9orf129Q5T035 196 aaKnown RBP9.18□□□□□ -0.94
LIG1-214ENST00000597146 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
LIG1-214ENST00000597146 SLC7A5P1Q8MH63 180 aa9.18□□□□□ -0.94
LIG1-214ENST00000597146 CHCHD1Q96BP2 118 aaKnown RBP9.18□□□□□ -0.94
LIG1-214ENST00000597146 URB1-AS1Q96HZ7 61 aa9.18□□□□□ -0.94
LIG1-214ENST00000597146 IGLC3P0DOY3 106 aa9.17□□□□□ -0.94
LIG1-214ENST00000597146 CBLN2Q8IUK8 224 aa9.17□□□□□ -0.94
LIG1-214ENST00000597146 HSBP1O75506 76 aa9.16□□□□□ -0.94
LIG1-214ENST00000597146 CHTOPQ9Y3Y2 248 aaKnown RBP9.16□□□□□ -0.94
LIG1-214ENST00000597146 C22orf24Q9Y442 160 aa9.16□□□□□ -0.94
LIG1-214ENST00000597146 A0A096LNJ9 63 aa9.15□□□□□ -0.94
LIG1-214ENST00000597146 PFN2P35080 140 aa9.15□□□□□ -0.94
LIG1-214ENST00000597146 IFI27L1Q96BM0 104 aa9.14□□□□□ -0.95
LIG1-214ENST00000597146 TRGC2P03986 189 aa9.13□□□□□ -0.95
LIG1-214ENST00000597146 ZNF22P17026 224 aaPredicted RBP9.13□□□□□ -0.95
LIG1-214ENST00000597146 YPEL4Q96NS1 127 aa9.13□□□□□ -0.95
LIG1-214ENST00000597146 MRPL55Q7Z7F7 128 aaKnown RBP9.12□□□□□ -0.95
LIG1-214ENST00000597146 KRTAP7-1Q8IUC3 87 aa9.12□□□□□ -0.95
LIG1-214ENST00000597146 NKAPP1Q8N9T2 125 aa9.12□□□□□ -0.95
LIG1-214ENST00000597146 RETNLBQ9BQ08 111 aa9.12□□□□□ -0.95
LIG1-214ENST00000597146 C11orf86A6NJI1 115 aa9.11□□□□□ -0.95
LIG1-214ENST00000597146 FAM19A2Q8N3H0 131 aa9.11□□□□□ -0.95
LIG1-214ENST00000597146 ZNF625Q96I27 306 aaPredicted RBP9.11□□□□□ -0.95
LIG1-214ENST00000597146 CDIP1Q9H305 208 aa9.11□□□□□ -0.95
LIG1-214ENST00000597146 H0Y8G0 127 aa9.1□□□□□ -0.95
LIG1-214ENST00000597146 SFTA2Q6UW10 78 aa9.1□□□□□ -0.95
LIG1-214ENST00000597146 IGLV5-39A0A0G2JS06 123 aa9.09□□□□□ -0.95
LIG1-214ENST00000597146 GAGE10A6NGK3 116 aa9.09□□□□□ -0.95
LIG1-214ENST00000597146 NUPR1O60356 82 aa9.09□□□□□ -0.95
LIG1-214ENST00000597146 TP73-AS1Q9UF72 201 aa9.09□□□□□ -0.95
LIG1-214ENST00000597146 ERG28Q9UKR5 140 aa9.09□□□□□ -0.95
LIG1-214ENST00000597146 TRAV12-1A0A0B4J245 112 aa9.08□□□□□ -0.96
LIG1-214ENST00000597146 RPL37AP8A6NKH3 93 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms