RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 NFE4Q86UQ8 179 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 KRTAP1-5Q9BYS1 174 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 DNAH1Q9P2D7 4330 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 LCE6AA0A183 80 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 C11orf86A6NJI1 115 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 HERVK_113P61574 105 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 COX6A2Q02221 97 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 CD164L2Q6UWJ8 174 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 FAM19A3Q7Z5A8 133 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 C5orf38Q86SI9 138 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 ATOH7Q8N100 152 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 C6orf223Q8N319 242 aa3.54□□□□□ -1.84
LIG3-210ENST00000588109 IGHV3-64A0A075B6Q5 118 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 IGLV5-39A0A0G2JS06 123 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 LOC105371267A0A1B0GV96 52 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 APOMO95445 188 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 SPINK8P0C7L1 97 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 ZNF22P17026 224 aaPredicted RBP3.53□□□□□ -1.84
LIG3-210ENST00000588109 HERV-K104P63124 156 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 JOSD1Q15040 202 aaPredicted RBP3.53□□□□□ -1.84
LIG3-210ENST00000588109 C1orf134Q5TEV5 83 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 Q6ZR54 194 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 CDKN2A-AS1Q9UH64 79 aa3.53□□□□□ -1.84
LIG3-210ENST00000588109 IGLV5-45A0A087WSX0 123 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 A0A087WZ39 114 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 IGHV3OR16-9A0A0B4J2B5 98 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 hDV102S1A0JD36 115 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 TMEM223A0PJW6 202 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 PRSS2P07478 247 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 UBE2V1Q13404 147 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 PYY3Q5JQD4 70 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 STPG4Q8N801 248 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 Q8N9P0 234 aaPredicted RBP3.52□□□□□ -1.85
LIG3-210ENST00000588109 VAMP8Q9BV40 100 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 TOMM7Q9P0U1 55 aa3.52□□□□□ -1.85
LIG3-210ENST00000588109 IGHV1-58A0A0C4DH39 117 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 SMIM1B2RUZ4 78 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 LECT2O14960 151 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 SMIM6P0DI80 62 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 LGALS3P17931 250 aaKnown RBP3.51□□□□□ -1.85
LIG3-210ENST00000588109 NMUP48645 174 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 S100A12P80511 92 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 SPAG11BQ08648 103 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 KRTAP26-1Q6PEX3 210 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 LINC01561Q8N1V8 128 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 ORAOV1Q8WV07 137 aa3.51□□□□□ -1.85
LIG3-210ENST00000588109 DNAH6Q9C0G6 4158 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 E9PLD3 99 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 LEPROTO15243 131 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 CKS1BP61024 79 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 HIGD2BQ4VC39 106 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 C14orf177Q52M58 125 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 C6orf226Q5I0X4 101 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 MAPKAPK5-AS1Q8N8E1 139 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 COX7B2Q8TF08 81 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 PLEKHB2Q96CS7 222 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 PAM16Q9Y3D7 125 aa3.5□□□□□ -1.85
LIG3-210ENST00000588109 GVQW2A0A096LPI5 108 aaPredicted RBP3.49□□□□□ -1.85
LIG3-210ENST00000588109 J3QQQ9 107 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 SPATA45Q537H7 98 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 Q6ZRN7 208 aaPredicted RBP3.49□□□□□ -1.85
LIG3-210ENST00000588109 Q8IZM0 81 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 C15orf56Q8N910 161 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 LINC00526Q96FQ7 95 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 CAMK2N2Q96S95 79 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 DNAH2Q9P225 4427 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 SACSQ9NZJ4 4579 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 KMT2AQ03164 3969 aa3.49□□□□□ -1.85
LIG3-210ENST00000588109 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.48□□□□□ -1.85
LIG3-210ENST00000588109 A0A087WTM6 91 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 IGKV2D-26A0A0A0MRZ7 120 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 NDUFA1O15239 70 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 CXCL5P42830 114 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 TSPEAR-AS2P59090 65 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 WFDC2Q14508 124 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 C12orf57Q99622 126 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 NDUFA12Q9UI09 145 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 DNAH10Q8IVF4 4471 aa3.48□□□□□ -1.85
LIG3-210ENST00000588109 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.47□□□□□ -1.85
LIG3-210ENST00000588109 MYMXA0A1B0GTQ4 84 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 LRCOL1A6NCL2 159 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 ZNF815PA8K554 130 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 RTL8CO15255 209 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 SYCNQ0VAF6 134 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 LINC01620Q4KN68 170 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 MEIG1Q5JSS6 88 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 SFTA2Q6UW10 78 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 C2orf82Q6UX34 121 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 SCGB1D4Q6XE38 83 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 PCP2Q8IVA1 136 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 Q8N814 137 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 ZNF625Q96I27 306 aaPredicted RBP3.47□□□□□ -1.85
LIG3-210ENST00000588109 C14orf144Q96I85 54 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 C2orf48Q96LS8 159 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 CARD19Q96LW7 228 aa3.47□□□□□ -1.85
LIG3-210ENST00000588109 COX8AP10176 69 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 CIRBPQ14011 172 aaKnown RBP3.46□□□□□ -1.86
LIG3-210ENST00000588109 KIAA0087Q14695 138 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 UNQ6190/PRO20217Q6UXQ8 127 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 Q6ZRU5 148 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms