RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CRPP02741 224 aa9.66□□□□□ -0.86
LIG3-205ENST00000585941 MALP21145 153 aa9.66□□□□□ -0.86
LIG3-205ENST00000585941 TRBV20-1A0A075B6N2 111 aa9.65□□□□□ -0.86
LIG3-205ENST00000585941 LOC107984156A0A0G2JMH3 177 aa9.65□□□□□ -0.86
LIG3-205ENST00000585941 ARL17AQ8IVW1 177 aa9.65□□□□□ -0.86
LIG3-205ENST00000585941 DAND5Q8N907 189 aa9.65□□□□□ -0.86
LIG3-205ENST00000585941 EIF4EBP3O60516 100 aaPredicted RBP9.64□□□□□ -0.87
LIG3-205ENST00000585941 NPC2P61916 151 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 FOXI1Q12951 378 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 ESRGQ1W209 222 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 CFAP161Q6P656 301 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 IGLV10-54A0A075B6I4 117 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 CKS1BP61024 79 aa9.64□□□□□ -0.87
LIG3-205ENST00000585941 KLK5Q9Y337 293 aaPredicted RBP9.64□□□□□ -0.87
LIG3-205ENST00000585941 A0A0U1RRA0 63 aa9.63□□□□□ -0.87
LIG3-205ENST00000585941 LINC00158P58513 81 aa9.63□□□□□ -0.87
LIG3-205ENST00000585941 Q1RN00 199 aa9.63□□□□□ -0.87
LIG3-205ENST00000585941 ENHOQ6UWT2 76 aa9.63□□□□□ -0.87
LIG3-205ENST00000585941 WFDC10BQ8IUB3 73 aa9.63□□□□□ -0.87
LIG3-205ENST00000585941 GAGE12HA6NDE8 117 aa9.62□□□□□ -0.87
LIG3-205ENST00000585941 PSMB2P49721 201 aa9.62□□□□□ -0.87
LIG3-205ENST00000585941 LINC01556Q5JQF7 62 aa9.62□□□□□ -0.87
LIG3-205ENST00000585941 TRBV30A0A0K0K1B3 111 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 F8W1H4 67 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 SCGB1C2P0DMR2 95 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 KIAA0087Q14695 138 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 MIR7-3HGQ8N6C7 128 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 UBE2WQ96B02 151 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 COX17Q14061 63 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 SOSTDC1Q6X4U4 206 aa9.61□□□□□ -0.87
LIG3-205ENST00000585941 H3BMG7 143 aa9.6□□□□□ -0.87
LIG3-205ENST00000585941 COX6CP09669 75 aa9.6□□□□□ -0.87
LIG3-205ENST00000585941 KRTAP21-3Q3LHN1 58 aa9.6□□□□□ -0.87
LIG3-205ENST00000585941 H7C2G1 150 aa9.59□□□□□ -0.87
LIG3-205ENST00000585941 RPL13AP40429 203 aaKnown RBP9.58□□□□□ -0.88
LIG3-205ENST00000585941 MUC7Q8TAX7 377 aa9.58□□□□□ -0.88
LIG3-205ENST00000585941 B9D2Q9BPU9 175 aa9.58□□□□□ -0.88
LIG3-205ENST00000585941 DNAH10OSP0CZ25 163 aa9.58□□□□□ -0.88
LIG3-205ENST00000585941 PFN2P35080 140 aa9.58□□□□□ -0.88
LIG3-205ENST00000585941 TRAV13-2A0A0B4J235 113 aa9.57□□□□□ -0.88
LIG3-205ENST00000585941 SPAG11BQ08648 103 aa9.57□□□□□ -0.88
LIG3-205ENST00000585941 C2orf82Q6UX34 121 aa9.57□□□□□ -0.88
LIG3-205ENST00000585941 SND1-IT1Q9HBX3 110 aa9.57□□□□□ -0.88
LIG3-205ENST00000585941 TCL1BO95988 128 aa9.56□□□□□ -0.88
LIG3-205ENST00000585941 CCL18P55774 89 aa9.56□□□□□ -0.88
LIG3-205ENST00000585941 TRIAP1O43715 76 aa9.55□□□□□ -0.88
LIG3-205ENST00000585941 ATXN8Q156A1 80 aa9.55□□□□□ -0.88
LIG3-205ENST00000585941 C1orf43Q9BWL3 253 aa9.55□□□□□ -0.88
LIG3-205ENST00000585941 GVQW2A0A096LPI5 108 aaPredicted RBP9.53□□□□□ -0.88
LIG3-205ENST00000585941 KRTAP26-1Q6PEX3 210 aa9.53□□□□□ -0.88
LIG3-205ENST00000585941 PRO0461Q9UI25 63 aa9.53□□□□□ -0.88
LIG3-205ENST00000585941 HUWE1Q7Z6Z7 4374 aaKnown RBP9.53□□□□□ -0.88
LIG3-205ENST00000585941 K7ERU9 68 aa9.52□□□□□ -0.89
LIG3-205ENST00000585941 NHLRC4P0CG21 123 aaPredicted RBP9.52□□□□□ -0.89
LIG3-205ENST00000585941 OCIAD2Q56VL3 154 aa9.52□□□□□ -0.89
LIG3-205ENST00000585941 LINC00588Q9Y4M8 146 aa9.52□□□□□ -0.89
LIG3-205ENST00000585941 F8WDY8 70 aa9.51□□□□□ -0.89
LIG3-205ENST00000585941 NTN5Q8WTR8 489 aaPredicted RBP9.51□□□□□ -0.89
LIG3-205ENST00000585941 UPK3BQ9BT76 320 aa9.51□□□□□ -0.89
LIG3-205ENST00000585941 WFDC2Q14508 124 aa9.51□□□□□ -0.89
LIG3-205ENST00000585941 ZNF561-AS1K7EIQ3 104 aa9.5□□□□□ -0.89
LIG3-205ENST00000585941 NDUFC2O95298 119 aa9.5□□□□□ -0.89
LIG3-205ENST00000585941 IGKV2-28A0A075B6P5 120 aa9.49□□□□□ -0.89
LIG3-205ENST00000585941 M0QXV9 152 aa9.49□□□□□ -0.89
LIG3-205ENST00000585941 IGKV2D-28P01615 120 aa9.49□□□□□ -0.89
LIG3-205ENST00000585941 UNQ6190/PRO20217Q6UXQ8 127 aa9.49□□□□□ -0.89
LIG3-205ENST00000585941 IGKV2D-24A0A075B6R9 120 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 C6orf223Q8N319 242 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 RMI2Q96E14 147 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 C2orf48Q96LS8 159 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 RPL28P46779 137 aaKnown RBP9.48□□□□□ -0.89
LIG3-205ENST00000585941 LINC01620Q4KN68 170 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 LINC00337Q8N6G1 96 aa9.48□□□□□ -0.89
LIG3-205ENST00000585941 C10orf25Q5T742 122 aa9.47□□□□□ -0.89
LIG3-205ENST00000585941 C9JAW5 83 aa9.46□□□□□ -0.89
LIG3-205ENST00000585941 LST1O00453 97 aa9.46□□□□□ -0.89
LIG3-205ENST00000585941 STAB2Q8WWQ8 2551 aa9.46□□□□□ -0.9
LIG3-205ENST00000585941 J3QR89 54 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 SLC25A20O43772 301 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 SMCPP49901 116 aaPredicted RBP9.45□□□□□ -0.9
LIG3-205ENST00000585941 ETDBQ3ZM63 59 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 C9orf116Q5BN46 136 aaPredicted RBP9.45□□□□□ -0.9
LIG3-205ENST00000585941 MTURNQ8N3F0 131 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 C15orf56Q8N910 161 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 LINC01600Q96MT4 127 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 CAMK2N2Q96S95 79 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 LINC00526Q96FQ7 95 aa9.45□□□□□ -0.9
LIG3-205ENST00000585941 TRBV10-2A0A0K0K1G8 114 aa9.44□□□□□ -0.9
LIG3-205ENST00000585941 Q9HAA7 133 aa9.44□□□□□ -0.9
LIG3-205ENST00000585941 C6orf48Q9UBA6 75 aa9.44□□□□□ -0.9
LIG3-205ENST00000585941 HIGD2BQ4VC39 106 aa9.43□□□□□ -0.9
LIG3-205ENST00000585941 OR13C6PQ8NH95 151 aa9.43□□□□□ -0.9
LIG3-205ENST00000585941 CLEC2BQ92478 149 aa9.43□□□□□ -0.9
LIG3-205ENST00000585941 DNAH9Q9NYC9 4486 aa9.43□□□□□ -0.9
LIG3-205ENST00000585941 COL7A1Q02388 2944 aa9.43□□□□□ -0.9
LIG3-205ENST00000585941 H0YGX0 51 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 TEN1Q86WV5 123 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 ANKRD29Q8N6D5 301 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 SMIM11BQ8TCY0 68 aa9.42□□□□□ -0.9
LIG3-205ENST00000585941 H3BT86 120 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms