RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 C16orf74Q96GX8 76 aa11.36□□□□□ -0.59
USP43-204ENST00000573955 NOTCH1P46531 2555 aa11.35□□□□□ -0.59
USP43-204ENST00000573955 CHCHD7Q9BUK0 85 aa11.35□□□□□ -0.59
USP43-204ENST00000573955 IGHV3-64A0A075B6Q5 118 aa11.34□□□□□ -0.59
USP43-204ENST00000573955 A0A0U1RQV1 116 aa11.34□□□□□ -0.59
USP43-204ENST00000573955 NDUFC2O95298 119 aa11.34□□□□□ -0.59
USP43-204ENST00000573955 A0A0J9YXV3 536 aa11.33□□□□□ -0.6
USP43-204ENST00000573955 PRSS2P07478 247 aa11.33□□□□□ -0.6
USP43-204ENST00000573955 FHL2Q14192 279 aa11.33□□□□□ -0.6
USP43-204ENST00000573955 C9orf66Q5T8R8 295 aa11.33□□□□□ -0.6
USP43-204ENST00000573955 FAM104AQ969W3 186 aa11.33□□□□□ -0.6
USP43-204ENST00000573955 K7EQD1 137 aa11.32□□□□□ -0.6
USP43-204ENST00000573955 DAZ2Q13117 558 aaKnown RBP11.32□□□□□ -0.6
USP43-204ENST00000573955 KRTAP24-1Q3LI83 254 aa11.32□□□□□ -0.6
USP43-204ENST00000573955 SERP1Q9Y6X1 66 aa11.32□□□□□ -0.6
USP43-204ENST00000573955 LOC100131303A0A0U1RQF7 123 aa11.31□□□□□ -0.6
USP43-204ENST00000573955 LEPROTO15243 131 aa11.31□□□□□ -0.6
USP43-204ENST00000573955 LINC01561Q8N1V8 128 aa11.31□□□□□ -0.6
USP43-204ENST00000573955 DAND5Q8N907 189 aa11.31□□□□□ -0.6
USP43-204ENST00000573955 A0A0U1RRA0 63 aa11.3□□□□□ -0.6
USP43-204ENST00000573955 DEFB130BP0DP73 79 aa11.3□□□□□ -0.6
USP43-204ENST00000573955 DEFB130AP0DP74 79 aa11.3□□□□□ -0.6
USP43-204ENST00000573955 UBE2D4Q9Y2X8 147 aa11.3□□□□□ -0.6
USP43-204ENST00000573955 RPL36AP83881 106 aaKnown RBP11.3□□□□□ -0.6
USP43-204ENST00000573955 RPL36ALQ969Q0 106 aaKnown RBP11.3□□□□□ -0.6
USP43-204ENST00000573955 TMEM243Q9BU79 118 aa11.3□□□□□ -0.6
USP43-204ENST00000573955 EPM2AB3EWF7 344 aa11.29□□□□□ -0.6
USP43-204ENST00000573955 USP17L23D6RBM5 183 aa11.29□□□□□ -0.6
USP43-204ENST00000573955 DAZ4Q86SG3 579 aaKnown RBP11.29□□□□□ -0.6
USP43-204ENST00000573955 BRK1Q8WUW1 75 aa11.29□□□□□ -0.6
USP43-204ENST00000573955 DAZ3Q9NR90 486 aaKnown RBP11.29□□□□□ -0.6
USP43-204ENST00000573955 TRGV4A0A0C4DH28 118 aa11.29□□□□□ -0.6
USP43-204ENST00000573955 TIRAPP58753 221 aa11.28□□□□□ -0.6
USP43-204ENST00000573955 A0A0J9YXY3 114 aa11.27□□□□□ -0.61
USP43-204ENST00000573955 DEFB4AO15263 64 aa11.27□□□□□ -0.61
USP43-204ENST00000573955 INAFM2P0DMQ5 153 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 DEFB135Q30KP9 77 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 NTM-AS1Q6ZSK4 140 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 OVOL2Q9BRP0 275 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 IGKV3D-7A0A0C4DH55 119 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 DGAT2L7PQ6IED9 249 aa11.26□□□□□ -0.61
USP43-204ENST00000573955 A0A087WVE0 104 aa11.25□□□□□ -0.61
USP43-204ENST00000573955 TRBV10-1A0A0K0K1A3 114 aa11.25□□□□□ -0.61
USP43-204ENST00000573955 SMIM26A0A096LP01 95 aa11.25□□□□□ -0.61
USP43-204ENST00000573955 C6orf226Q5I0X4 101 aa11.24□□□□□ -0.61
USP43-204ENST00000573955 X6R8D5 127 aa11.24□□□□□ -0.61
USP43-204ENST00000573955 ANK2Q01484 3957 aa11.23□□□□□ -0.61
USP43-204ENST00000573955 Q6JHZ5 121 aa11.23□□□□□ -0.61
USP43-204ENST00000573955 NBEAL1Q6ZS30 2694 aa11.22□□□□□ -0.61
USP43-204ENST00000573955 MRPS36P82909 103 aaKnown RBP11.22□□□□□ -0.61
USP43-204ENST00000573955 CMYA5Q8N3K9 4069 aa11.21□□□□□ -0.61
USP43-204ENST00000573955 A8MZ25 164 aa11.21□□□□□ -0.61
USP43-204ENST00000573955 BAALC-AS2P0C853 105 aa11.21□□□□□ -0.61
USP43-204ENST00000573955 OXLD1Q5BKU9 147 aa11.21□□□□□ -0.61
USP43-204ENST00000573955 FP248Q71RG6 208 aaPredicted RBP11.21□□□□□ -0.61
USP43-204ENST00000573955 LITAFQ99732 161 aa11.21□□□□□ -0.62
USP43-204ENST00000573955 TRBV6-4A0A1B0GX49 114 aa11.2□□□□□ -0.62
USP43-204ENST00000573955 CIRBPQ14011 172 aaKnown RBP11.2□□□□□ -0.62
USP43-204ENST00000573955 DNAL4O96015 105 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 FAM222AQ5U5X8 452 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 MGAM2Q2M2H8 2515 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 UBE2L6O14933 153 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 IGHV3-30-3P0DP02 117 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 C20orf197Q8N268 126 aa11.19□□□□□ -0.62
USP43-204ENST00000573955 COX7A2LO14548 114 aa11.18□□□□□ -0.62
USP43-204ENST00000573955 MIAQ16674 131 aa11.18□□□□□ -0.62
USP43-204ENST00000573955 ZNF561-AS1K7EIQ3 104 aa11.18□□□□□ -0.62
USP43-204ENST00000573955 ADAMTSL4-AS1Q5T5F5 129 aa11.18□□□□□ -0.62
USP43-204ENST00000573955 A0A096LPF7 62 aa11.17□□□□□ -0.62
USP43-204ENST00000573955 COX6A2Q02221 97 aa11.17□□□□□ -0.62
USP43-204ENST00000573955 CDKN2A-AS1Q9UH64 79 aa11.17□□□□□ -0.62
USP43-204ENST00000573955 GHRHP01286 108 aa11.17□□□□□ -0.62
USP43-204ENST00000573955 WFDC9Q8NEX5 89 aa11.17□□□□□ -0.62
USP43-204ENST00000573955 IGHV4-30-4P0DP06 118 aa11.16□□□□□ -0.62
USP43-204ENST00000573955 APOC4P55056 127 aa11.16□□□□□ -0.62
USP43-204ENST00000573955 IGKV3OR2-268A0A0C4DH90 116 aa11.16□□□□□ -0.62
USP43-204ENST00000573955 XCL1P47992 114 aa11.16□□□□□ -0.62
USP43-204ENST00000573955 GYPEP15421 78 aa11.15□□□□□ -0.62
USP43-204ENST00000573955 IGHV4-28A0A0C4DH34 117 aa11.15□□□□□ -0.62
USP43-204ENST00000573955 COPS9Q8WXC6 57 aa11.15□□□□□ -0.62
USP43-204ENST00000573955 IGHV1-58A0A0C4DH39 117 aa11.14□□□□□ -0.63
USP43-204ENST00000573955 LINC00242Q5T6M2 205 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 CDC42SE2Q9NRR3 84 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 C22orf24Q9Y442 160 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 TENM3Q9P273 2699 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 LINC00612Q8N6U2 182 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 VSIG2Q96IQ7 327 aa11.13□□□□□ -0.63
USP43-204ENST00000573955 H7BZZ5 65 aa11.12□□□□□ -0.63
USP43-204ENST00000573955 FAM19A1Q7Z5A9 133 aa11.12□□□□□ -0.63
USP43-204ENST00000573955 CELA1Q9UNI1 258 aa11.12□□□□□ -0.63
USP43-204ENST00000573955 TRBV6-8A0A0A6YYG3 113 aa11.12□□□□□ -0.63
USP43-204ENST00000573955 LINC00846Q9NV44 126 aa11.11□□□□□ -0.63
USP43-204ENST00000573955 NDUFA12Q9UI09 145 aa11.11□□□□□ -0.63
USP43-204ENST00000573955 IGLV4-60A0A075B6I1 120 aa11.11□□□□□ -0.63
USP43-204ENST00000573955 PRB2P02812 416 aaPredicted RBP11.11□□□□□ -0.63
USP43-204ENST00000573955 HTN3P15516 51 aa11.1□□□□□ -0.63
USP43-204ENST00000573955 PMAIP1Q13794 54 aa11.1□□□□□ -0.63
USP43-204ENST00000573955 RETNQ9HD89 108 aa11.1□□□□□ -0.63
USP43-204ENST00000573955 LINC00474Q9P2X8 69 aa11.1□□□□□ -0.63
USP43-204ENST00000573955 KRTAP10-11P60412 298 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms