RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SVBPQ8N300 66 aa5.12□□□□□ -1.59
VPS53-214ENST00000572607 FAM104AQ969W3 186 aa5.12□□□□□ -1.59
VPS53-214ENST00000572607 PACRGQ96M98 296 aaPredicted RBP5.12□□□□□ -1.59
VPS53-214ENST00000572607 TIMM17AQ99595 171 aa5.12□□□□□ -1.59
VPS53-214ENST00000572607 SMCO4Q9NRQ5 59 aa5.12□□□□□ -1.59
VPS53-214ENST00000572607 MRPL35Q9NZE8 188 aaKnown RBP5.12□□□□□ -1.59
VPS53-214ENST00000572607 SNAPINO95295 136 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 PRSS2P07478 247 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 UBE2D1P51668 147 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 KRTAP10-4P60372 401 aaPredicted RBP5.11□□□□□ -1.59
VPS53-214ENST00000572607 RNF151Q2KHN1 245 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 LINC01561Q8N1V8 128 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 TOMM6Q96B49 74 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 SCGB3A1Q96QR1 104 aa5.11□□□□□ -1.59
VPS53-214ENST00000572607 IGIPA6NJ69 53 aa5.1□□□□□ -1.59
VPS53-214ENST00000572607 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.1□□□□□ -1.59
VPS53-214ENST00000572607 OXTP01178 125 aa5.1□□□□□ -1.59
VPS53-214ENST00000572607 HERVK_113P63121 156 aa5.1□□□□□ -1.59
VPS53-214ENST00000572607 AMELXQ99217 191 aa5.1□□□□□ -1.59
VPS53-214ENST00000572607 ALKBH7Q9BT30 221 aaPredicted RBP5.1□□□□□ -1.59
VPS53-214ENST00000572607 GEMIN7Q9H840 131 aaKnown RBP5.1□□□□□ -1.59
VPS53-214ENST00000572607 A0A0J9YXV3 536 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 CKS1BP61024 79 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 ZC2HC1BQ5TFG8 222 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 ERASQ7Z444 233 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 TOMM7Q9P0U1 55 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 TRAPPC1Q9Y5R8 145 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 TNXBP22105 4242 aa5.09□□□□□ -1.59
VPS53-214ENST00000572607 TRBV30A0A0K0K1B3 111 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 PRR3P79522 188 aaKnown RBP5.08□□□□□ -1.6
VPS53-214ENST00000572607 C6orf226Q5I0X4 101 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 UNQ6190/PRO20217Q6UXQ8 127 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 LINC00173Q6ZV60 143 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 FAM19A3Q7Z5A8 133 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 C6orf48Q9UBA6 75 aa5.08□□□□□ -1.6
VPS53-214ENST00000572607 LRP2P98164 4655 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 RNF213Q63HN8 5207 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 LINC01546A6NGU7 62 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 TLX1NBP0CAT3 122 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 HNRNPA3P51991 378 aaKnown RBP5.07□□□□□ -1.6
VPS53-214ENST00000572607 RAB5BP61020 215 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 GAGE2EQ4V326 116 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 C9orf116Q5BN46 136 aaPredicted RBP5.07□□□□□ -1.6
VPS53-214ENST00000572607 C10orf25Q5T742 122 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 Q6ZRP5 223 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 LINC00469Q8N7U9 141 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 GAGE2DQ9UEU5 116 aa5.07□□□□□ -1.6
VPS53-214ENST00000572607 A0A1W2PNN7 141 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 CXCL5P42830 114 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 KIAA0087Q14695 138 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 PMVKQ15126 192 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 Q8IZM0 81 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 CDKN2A-AS1Q9UH64 79 aa5.06□□□□□ -1.6
VPS53-214ENST00000572607 TINCRA0A1B0GVN0 87 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 NDUFC2-KCTD14E9PQ53 114 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 H3BRM9 83 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 HBDP02042 147 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 LINC00614P0C842 121 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 NDUFA6P56556 154 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 C2orf82Q6UX34 121 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 C18orf32Q8TCD1 76 aa5.05□□□□□ -1.6
VPS53-214ENST00000572607 F8VRH5 84 aa5.04□□□□□ -1.6
VPS53-214ENST00000572607 PDZD11Q5EBL8 140 aa5.04□□□□□ -1.6
VPS53-214ENST00000572607 REG3GQ6UW15 175 aa5.04□□□□□ -1.6
VPS53-214ENST00000572607 SPINK6Q6UWN8 80 aa5.04□□□□□ -1.6
VPS53-214ENST00000572607 PHF5AQ7RTV0 110 aaKnown RBP5.04□□□□□ -1.6
VPS53-214ENST00000572607 FAM19A5Q7Z5A7 132 aaPredicted RBP5.04□□□□□ -1.6
VPS53-214ENST00000572607 CST9LQ9H4G1 147 aa5.04□□□□□ -1.6
VPS53-214ENST00000572607 ATP5LO75964 103 aa5.03□□□□□ -1.6
VPS53-214ENST00000572607 UBE2BP63146 152 aa5.03□□□□□ -1.6
VPS53-214ENST00000572607 C1orf137Q5JT78 98 aa5.03□□□□□ -1.6
VPS53-214ENST00000572607 SERTAD4-AS1Q5TG53 156 aa5.03□□□□□ -1.6
VPS53-214ENST00000572607 COX7B2Q8TF08 81 aa5.03□□□□□ -1.6
VPS53-214ENST00000572607 IGLV5-45A0A087WSX0 123 aa5.02□□□□□ -1.61
VPS53-214ENST00000572607 SMIM1B2RUZ4 78 aa5.02□□□□□ -1.61
VPS53-214ENST00000572607 M0QXV9 152 aa5.02□□□□□ -1.61
VPS53-214ENST00000572607 PSORS1C2Q9UIG4 136 aa5.02□□□□□ -1.61
VPS53-214ENST00000572607 FAM168BA1KXE4 195 aa5.01□□□□□ -1.61
VPS53-214ENST00000572607 SPINK8P0C7L1 97 aa5.01□□□□□ -1.61
VPS53-214ENST00000572607 IGLC3P0DOY3 106 aa5.01□□□□□ -1.61
VPS53-214ENST00000572607 PMCHL1Q16048 86 aa5.01□□□□□ -1.61
VPS53-214ENST00000572607 CHCHD1Q96BP2 118 aaKnown RBP5.01□□□□□ -1.61
VPS53-214ENST00000572607 A0A096LNJ9 63 aa5□□□□□ -1.61
VPS53-214ENST00000572607 LBHQ53QV2 105 aaPredicted RBP5□□□□□ -1.61
VPS53-214ENST00000572607 C9orf129Q5T035 196 aaKnown RBP5□□□□□ -1.61
VPS53-214ENST00000572607 BAGE3Q86Y29 109 aa5□□□□□ -1.61
VPS53-214ENST00000572607 CBLN2Q8IUK8 224 aa5□□□□□ -1.61
VPS53-214ENST00000572607 URB1-AS1Q96HZ7 61 aa5□□□□□ -1.61
VPS53-214ENST00000572607 HSBP1O75506 76 aa4.99□□□□□ -1.61
VPS53-214ENST00000572607 TMEM170BQ5T4T1 132 aa4.99□□□□□ -1.61
VPS53-214ENST00000572607 YPEL4Q96NS1 127 aa4.99□□□□□ -1.61
VPS53-214ENST00000572607 XAGE1AQ9HD64 81 aa4.99□□□□□ -1.61
VPS53-214ENST00000572607 CHTOPQ9Y3Y2 248 aaKnown RBP4.99□□□□□ -1.61
VPS53-214ENST00000572607 IGLV7-43P04211 117 aa4.98□□□□□ -1.61
VPS53-214ENST00000572607 ZNF22P17026 224 aaPredicted RBP4.98□□□□□ -1.61
VPS53-214ENST00000572607 SRSF9Q13242 221 aaKnown RBP eCLIP4.98□□□□□ -1.61
VPS53-214ENST00000572607 SFTA2Q6UW10 78 aa4.98□□□□□ -1.61
VPS53-214ENST00000572607 DIRC1Q969H9 104 aa4.98□□□□□ -1.61
VPS53-214ENST00000572607 LINC01600Q96MT4 127 aa4.98□□□□□ -1.61
VPS53-214ENST00000572607 MT1HL1P0DM35 61 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms