RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 IL17DQ8TAD2 202 aa10.84□□□□□ -0.67
CIITA-204ENST00000570546 PRRC2AP48634 2157 aaKnown RBP10.83□□□□□ -0.68
CIITA-204ENST00000570546 HIVEP3Q5T1R4 2406 aa10.83□□□□□ -0.68
CIITA-204ENST00000570546 C2CD3Q4AC94 2353 aa10.83□□□□□ -0.68
CIITA-204ENST00000570546 LINC01561Q8N1V8 128 aa10.82□□□□□ -0.68
CIITA-204ENST00000570546 RETNQ9HD89 108 aa10.82□□□□□ -0.68
CIITA-204ENST00000570546 PPDPFQ9H3Y8 114 aa10.82□□□□□ -0.68
CIITA-204ENST00000570546 TRAV7A0A075B6U4 112 aa10.81□□□□□ -0.68
CIITA-204ENST00000570546 C4orf48Q5BLP8 95 aa10.81□□□□□ -0.68
CIITA-204ENST00000570546 WFDC13Q8IUB5 93 aa10.81□□□□□ -0.68
CIITA-204ENST00000570546 KLK9Q2XQG4 91 aa10.8□□□□□ -0.68
CIITA-204ENST00000570546 FAM30AQ9NZY2 134 aa10.79□□□□□ -0.68
CIITA-204ENST00000570546 LINC00846Q9NV44 126 aa10.79□□□□□ -0.68
CIITA-204ENST00000570546 IGLV5-45A0A087WSX0 123 aa10.78□□□□□ -0.68
CIITA-204ENST00000570546 TRBV7-7A0A0K0K1E9 115 aa10.78□□□□□ -0.68
CIITA-204ENST00000570546 LINC00575Q6W349 94 aa10.78□□□□□ -0.68
CIITA-204ENST00000570546 Q9UF83 564 aa10.77□□□□□ -0.69
CIITA-204ENST00000570546 Q6ZTC4 211 aa10.77□□□□□ -0.69
CIITA-204ENST00000570546 AGRNO00468 2067 aa10.76□□□□□ -0.69
CIITA-204ENST00000570546 IGHV3OR16-9A0A0B4J2B5 98 aa10.76□□□□□ -0.69
CIITA-204ENST00000570546 SVIPQ8NHG7 77 aa10.76□□□□□ -0.69
CIITA-204ENST00000570546 MYO18BQ8IUG5 2567 aa10.75□□□□□ -0.69
CIITA-204ENST00000570546 LYPD5Q6UWN5 251 aa10.75□□□□□ -0.69
CIITA-204ENST00000570546 A8MTW9 85 aa10.75□□□□□ -0.69
CIITA-204ENST00000570546 CCDC168Q8NDH2 2452 aa10.75□□□□□ -0.69
CIITA-204ENST00000570546 C1orf137Q5JT78 98 aa10.74□□□□□ -0.69
CIITA-204ENST00000570546 SBSPONQ8IVN8 264 aa10.74□□□□□ -0.69
CIITA-204ENST00000570546 CELA1Q9UNI1 258 aa10.74□□□□□ -0.69
CIITA-204ENST00000570546 UTRNP46939 3433 aa10.74□□□□□ -0.69
CIITA-204ENST00000570546 PLAC8L1A1L4L8 177 aa10.73□□□□□ -0.69
CIITA-204ENST00000570546 SOSTDC1Q6X4U4 206 aa10.73□□□□□ -0.69
CIITA-204ENST00000570546 PIEZO1Q92508 2521 aa10.72□□□□□ -0.69
CIITA-204ENST00000570546 Q8N3U1 123 aa10.72□□□□□ -0.69
CIITA-204ENST00000570546 PRR4Q16378 134 aa10.72□□□□□ -0.69
CIITA-204ENST00000570546 C2orf48Q96LS8 159 aa10.71□□□□□ -0.69
CIITA-204ENST00000570546 REG3GQ6UW15 175 aa10.71□□□□□ -0.69
CIITA-204ENST00000570546 SERP1Q9Y6X1 66 aa10.71□□□□□ -0.69
CIITA-204ENST00000570546 Q6ZVQ6 151 aa10.71□□□□□ -0.7
CIITA-204ENST00000570546 HRCT1Q6UXD1 115 aa10.71□□□□□ -0.7
CIITA-204ENST00000570546 MRPL55Q7Z7F7 128 aaKnown RBP10.71□□□□□ -0.7
CIITA-204ENST00000570546 FAM218AQ96MZ4 157 aa10.71□□□□□ -0.7
CIITA-204ENST00000570546 A0A0U1RQV1 116 aa10.7□□□□□ -0.7
CIITA-204ENST00000570546 F8WDY8 70 aa10.7□□□□□ -0.7
CIITA-204ENST00000570546 SPTSSBQ8NFR3 76 aa10.7□□□□□ -0.7
CIITA-204ENST00000570546 ZNF706Q9Y5V0 76 aaPredicted RBP10.7□□□□□ -0.7
CIITA-204ENST00000570546 FHL3Q13643 280 aa10.69□□□□□ -0.7
CIITA-204ENST00000570546 V9GYY9 64 aa10.69□□□□□ -0.7
CIITA-204ENST00000570546 BPTFQ12830 3046 aa10.69□□□□□ -0.7
CIITA-204ENST00000570546 M0R2N4 97 aa10.69□□□□□ -0.7
CIITA-204ENST00000570546 SMIM26A0A096LP01 95 aa10.69□□□□□ -0.7
CIITA-204ENST00000570546 Q6ZRU5 148 aa10.68□□□□□ -0.7
CIITA-204ENST00000570546 IGLV9-49A0A0B4J1Y8 123 aa10.68□□□□□ -0.7
CIITA-204ENST00000570546 LINC01547P58512 204 aaPredicted RBP10.68□□□□□ -0.7
CIITA-204ENST00000570546 LRCOL1A6NCL2 159 aa10.67□□□□□ -0.7
CIITA-204ENST00000570546 LINC00474Q9P2X8 69 aa10.67□□□□□ -0.7
CIITA-204ENST00000570546 CEP350Q5VT06 3117 aa10.67□□□□□ -0.7
CIITA-204ENST00000570546 C10orf25Q5T742 122 aa10.67□□□□□ -0.7
CIITA-204ENST00000570546 LITAFQ99732 161 aa10.66□□□□□ -0.7
CIITA-204ENST00000570546 MYO9AB2RTY4 2548 aa10.65□□□□□ -0.7
CIITA-204ENST00000570546 PRYO14603 147 aa10.65□□□□□ -0.7
CIITA-204ENST00000570546 SPINK6Q6UWN8 80 aa10.65□□□□□ -0.71
CIITA-204ENST00000570546 SEC61GP60059 68 aa10.63□□□□□ -0.71
CIITA-204ENST00000570546 C7orf33Q8WU49 177 aa10.63□□□□□ -0.71
CIITA-204ENST00000570546 CASC2Q6XLA1 102 aa10.62□□□□□ -0.71
CIITA-204ENST00000570546 CEP295Q9C0D2 2601 aa10.62□□□□□ -0.71
CIITA-204ENST00000570546 CXCL6P80162 114 aa10.62□□□□□ -0.71
CIITA-204ENST00000570546 ABCA2Q9BZC7 2435 aa10.62□□□□□ -0.71
CIITA-204ENST00000570546 X6R8D5 127 aa10.6□□□□□ -0.71
CIITA-204ENST00000570546 ANKRD11Q6UB99 2663 aaPredicted RBP10.6□□□□□ -0.71
CIITA-204ENST00000570546 SPATA3Q8NHX4 192 aa10.59□□□□□ -0.71
CIITA-204ENST00000570546 LINC00208Q96KT6 92 aa10.59□□□□□ -0.71
CIITA-204ENST00000570546 Q9BRP9 147 aa10.58□□□□□ -0.72
CIITA-204ENST00000570546 C6orf48Q9UBA6 75 aa10.58□□□□□ -0.72
CIITA-204ENST00000570546 FSHBP01225 129 aa10.58□□□□□ -0.72
CIITA-204ENST00000570546 TMEM254Q8TBM7 123 aa10.58□□□□□ -0.72
CIITA-204ENST00000570546 Q8N9L7 120 aa10.56□□□□□ -0.72
CIITA-204ENST00000570546 CRYGAP11844 174 aa10.56□□□□□ -0.72
CIITA-204ENST00000570546 A0A087WSZ3 146 aa10.55□□□□□ -0.72
CIITA-204ENST00000570546 ESRGQ1W209 222 aa10.54□□□□□ -0.72
CIITA-204ENST00000570546 A6NED7 52 aa10.54□□□□□ -0.72
CIITA-204ENST00000570546 C22orf24Q9Y442 160 aa10.54□□□□□ -0.72
CIITA-204ENST00000570546 KIAA0087Q14695 138 aa10.54□□□□□ -0.72
CIITA-204ENST00000570546 DEFB116Q30KQ4 102 aa10.54□□□□□ -0.72
CIITA-204ENST00000570546 NUPR2A6NF83 97 aa10.53□□□□□ -0.72
CIITA-204ENST00000570546 LINC01556Q5JQF7 62 aa10.53□□□□□ -0.72
CIITA-204ENST00000570546 PRR15LQ9BU68 103 aa10.53□□□□□ -0.72
CIITA-204ENST00000570546 ELOF1P60002 83 aaKnown RBP10.51□□□□□ -0.73
CIITA-204ENST00000570546 Q6ZQT0 140 aa10.51□□□□□ -0.73
CIITA-204ENST00000570546 HCG22E2RYF7 251 aa10.51□□□□□ -0.73
CIITA-204ENST00000570546 USP9XQ93008 2570 aaPredicted RBP10.51□□□□□ -0.73
CIITA-204ENST00000570546 TRBV7-6A0A0J9YX20 115 aa10.51□□□□□ -0.73
CIITA-204ENST00000570546 PRLHP81277 87 aa10.51□□□□□ -0.73
CIITA-204ENST00000570546 LY6G6CO95867 125 aa10.5□□□□□ -0.73
CIITA-204ENST00000570546 PCNTO95613 3336 aa10.49□□□□□ -0.73
CIITA-204ENST00000570546 LOC110117498A0A087WWA1 95 aa10.49□□□□□ -0.73
CIITA-204ENST00000570546 SMCR5Q8TEV8 140 aa10.48□□□□□ -0.73
CIITA-204ENST00000570546 IGHV6-1A0A0B4J1U7 121 aa10.48□□□□□ -0.73
CIITA-204ENST00000570546 C1orf195Q5TG92 126 aa10.48□□□□□ -0.73
CIITA-204ENST00000570546 H0Y9P7 68 aa10.47□□□□□ -0.73
CIITA-204ENST00000570546 H3BNG1 76 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms