RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 F8WDY8 70 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 SPINK8P0C7L1 97 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 SMIM13P0DJ93 91 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 RPL24P83731 157 aaKnown RBP5.45□□□□□ -1.54
VPS39-213ENST00000570062 COX6A2Q02221 97 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 ESRGQ1W209 222 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 RMI2Q96E14 147 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 UPK3BQ9BT76 320 aa5.45□□□□□ -1.54
VPS39-213ENST00000570062 TRAV8-3A0A0A6YYJ7 113 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.44□□□□□ -1.54
VPS39-213ENST00000570062 IGKV3OR2-268A0A0C4DH90 116 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 NUPR2A6NF83 97 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 DNAH10OSP0CZ25 163 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 MALP21145 153 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 C6orf226Q5I0X4 101 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 CFAP161Q6P656 301 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 Q8IZM0 81 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 COX7B2Q8TF08 81 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 CHCHD10Q8WYQ3 142 aaPredicted RBP5.44□□□□□ -1.54
VPS39-213ENST00000570062 SPANXDQ9BXN6 97 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 SPANXCQ9NY87 97 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 COX11Q9Y6N1 276 aa5.44□□□□□ -1.54
VPS39-213ENST00000570062 IGLL5B9A064 214 aa5.43□□□□□ -1.54
VPS39-213ENST00000570062 XCL1P47992 114 aa5.43□□□□□ -1.54
VPS39-213ENST00000570062 TTTY13Q9BZ97 58 aa5.43□□□□□ -1.54
VPS39-213ENST00000570062 KLK12Q9UKR0 248 aa5.43□□□□□ -1.54
VPS39-213ENST00000570062 IGHV3-64A0A075B6Q5 118 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 IBA57-AS1B1ANH7 110 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 TSPEAR-AS2P59090 65 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 CKS1BP61024 79 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 COX17Q14061 63 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 Q9H8V8 135 aa5.42□□□□□ -1.54
VPS39-213ENST00000570062 HYDINQ4G0P3 5121 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 IGHV3-30P01768 117 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 IGHV3-33P01772 117 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 IGHV3-30-5P0DP03 117 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 MEIG1Q5JSS6 88 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 C5orf38Q86SI9 138 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 UBE2WQ96B02 151 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 ZNF625Q96I27 306 aaPredicted RBP5.41□□□□□ -1.54
VPS39-213ENST00000570062 C1orf43Q9BWL3 253 aa5.41□□□□□ -1.54
VPS39-213ENST00000570062 A0A1B0GWB2 263 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 GAGE12HA6NDE8 117 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 FOXI1Q12951 378 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 LYRM7Q5U5X0 104 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 ENHOQ6UWT2 76 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 WFDC10BQ8IUB3 73 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 TOMM7Q9P0U1 55 aa5.4□□□□□ -1.54
VPS39-213ENST00000570062 PCLOQ9Y6V0 5065 aa5.39□□□□□ -1.55
VPS39-213ENST00000570062 C9orf118A6NHY6 69 aa5.39□□□□□ -1.55
VPS39-213ENST00000570062 NHP2Q9NX24 153 aaKnown RBP5.39□□□□□ -1.55
VPS39-213ENST00000570062 LINC00588Q9Y4M8 146 aa5.39□□□□□ -1.55
VPS39-213ENST00000570062 A0A0B4J2C4 111 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 FXYD2P54710 66 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 TTC32Q5I0X7 151 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 CLPSL2Q6UWE3 100 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 MUSTN1Q8IVN3 82 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 UBE2DNLQ8IWF7 75 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 RAB37Q96AX2 223 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 PRO1854Q9UHT4 67 aa5.38□□□□□ -1.55
VPS39-213ENST00000570062 HUWE1Q7Z6Z7 4374 aaKnown RBP5.38□□□□□ -1.55
VPS39-213ENST00000570062 GVQW2A0A096LPI5 108 aaPredicted RBP5.37□□□□□ -1.55
VPS39-213ENST00000570062 ZNF561-AS1K7EIQ3 104 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 TAX1BP3O14907 124 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 LINC00158P58513 81 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 GTF2H5Q6ZYL4 71 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 C2orf48Q96LS8 159 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 LITAFQ99732 161 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 APLNQ9ULZ1 77 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 PLA2G2DQ9UNK4 145 aa5.37□□□□□ -1.55
VPS39-213ENST00000570062 IGLV10-54A0A075B6I4 117 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 PLA2G1BP04054 148 aaKnown RBP5.36□□□□□ -1.55
VPS39-213ENST00000570062 FABP2P12104 132 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 SPAG11BQ08648 103 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 KIAA0087Q14695 138 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 VAMP3Q15836 100 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 LINC00308Q8TCZ7 52 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 ERG28Q9UKR5 140 aa5.36□□□□□ -1.55
VPS39-213ENST00000570062 DNAH9Q9NYC9 4486 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 IGKV2D-24A0A075B6R9 120 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 TRAV13-2A0A0B4J235 113 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 LOC107984156A0A0G2JMH3 177 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 TRBV30A0A0K0K1B3 111 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 A0A1B0GV90 55 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 A4D1N5 150 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 COX6CP09669 75 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 ARL17AQ8IVW1 177 aa5.35□□□□□ -1.55
VPS39-213ENST00000570062 TRBV20-1A0A075B6N2 111 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 CFC1BP0CG36 223 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 CFC1P0CG37 223 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 RNF151Q2KHN1 245 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 ADAMTSL4-AS1Q5T5F5 129 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 NTN5Q8WTR8 489 aaPredicted RBP5.34□□□□□ -1.55
VPS39-213ENST00000570062 CBY1Q9Y3M2 126 aa5.34□□□□□ -1.55
VPS39-213ENST00000570062 A0A1W2PPM0 123 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 GAGE10A6NGK3 116 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 H3BUT2 72 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 NDUFC2O95298 119 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 UBE2V1Q13404 147 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 C14orf177Q52M58 125 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms