RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OXTP01178 125 aa9.36□□□□□ -0.91
VPS39-210ENST00000568357 LINC00614P0C842 121 aa9.36□□□□□ -0.91
VPS39-210ENST00000568357 TLX1NBP0CAT3 122 aa9.36□□□□□ -0.91
VPS39-210ENST00000568357 SEC11AP67812 179 aa9.36□□□□□ -0.91
VPS39-210ENST00000568357 PRR3P79522 188 aaKnown RBP9.36□□□□□ -0.91
VPS39-210ENST00000568357 GEMIN7Q9H840 131 aaKnown RBP9.36□□□□□ -0.91
VPS39-210ENST00000568357 SLC7A5P1Q8MH63 180 aa9.35□□□□□ -0.91
VPS39-210ENST00000568357 TOMM7Q9P0U1 55 aa9.35□□□□□ -0.91
VPS39-210ENST00000568357 TRBV30A0A0K0K1B3 111 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 TINCRA0A1B0GVN0 87 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 PMVKQ15126 192 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 GAGE2EQ4V326 116 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 C6orf226Q5I0X4 101 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 GAGE2DQ9UEU5 116 aa9.34□□□□□ -0.91
VPS39-210ENST00000568357 FAM168BA1KXE4 195 aa9.33□□□□□ -0.92
VPS39-210ENST00000568357 PRSS2P07478 247 aa9.33□□□□□ -0.92
VPS39-210ENST00000568357 PMCHL1Q16048 86 aa9.33□□□□□ -0.92
VPS39-210ENST00000568357 Q8IZM0 81 aa9.33□□□□□ -0.92
VPS39-210ENST00000568357 LINC00469Q8N7U9 141 aa9.33□□□□□ -0.92
VPS39-210ENST00000568357 LRP2P98164 4655 aa9.32□□□□□ -0.92
VPS39-210ENST00000568357 IGLV5-45A0A087WSX0 123 aa9.32□□□□□ -0.92
VPS39-210ENST00000568357 CKS1BP61024 79 aa9.32□□□□□ -0.92
VPS39-210ENST00000568357 CBLN2Q8IUK8 224 aa9.32□□□□□ -0.92
VPS39-210ENST00000568357 PACRGQ96M98 296 aaPredicted RBP9.32□□□□□ -0.92
VPS39-210ENST00000568357 SMIM1B2RUZ4 78 aa9.31□□□□□ -0.92
VPS39-210ENST00000568357 PHF5AQ7RTV0 110 aaKnown RBP9.31□□□□□ -0.92
VPS39-210ENST00000568357 KRTAP7-1Q8IUC3 87 aa9.31□□□□□ -0.92
VPS39-210ENST00000568357 NDUFC2-KCTD14E9PQ53 114 aa9.3□□□□□ -0.92
VPS39-210ENST00000568357 HBDP02042 147 aa9.3□□□□□ -0.92
VPS39-210ENST00000568357 PDZD11Q5EBL8 140 aa9.3□□□□□ -0.92
VPS39-210ENST00000568357 NDUFA6P56556 154 aa9.29□□□□□ -0.92
VPS39-210ENST00000568357 RAB5BP61020 215 aa9.29□□□□□ -0.92
VPS39-210ENST00000568357 C9orf129Q5T035 196 aaKnown RBP9.29□□□□□ -0.92
VPS39-210ENST00000568357 SPINK8P0C7L1 97 aa9.28□□□□□ -0.92
VPS39-210ENST00000568357 SRSF9Q13242 221 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS39-210ENST00000568357 F8VRH5 84 aa9.27□□□□□ -0.93
VPS39-210ENST00000568357 IGLC3P0DOY3 106 aa9.27□□□□□ -0.93
VPS39-210ENST00000568357 FAM19A5Q7Z5A7 132 aaPredicted RBP9.27□□□□□ -0.93
VPS39-210ENST00000568357 KRTAP11-1Q8IUC1 163 aa9.27□□□□□ -0.93
VPS39-210ENST00000568357 COX7B2Q8TF08 81 aa9.27□□□□□ -0.93
VPS39-210ENST00000568357 PSORS1C2Q9UIG4 136 aa9.27□□□□□ -0.93
VPS39-210ENST00000568357 MT1HL1P0DM35 61 aa9.26□□□□□ -0.93
VPS39-210ENST00000568357 ATP5LO75964 103 aa9.25□□□□□ -0.93
VPS39-210ENST00000568357 SPINK6Q6UWN8 80 aa9.25□□□□□ -0.93
VPS39-210ENST00000568357 BAGE3Q86Y29 109 aa9.25□□□□□ -0.93
VPS39-210ENST00000568357 H3BRM9 83 aa9.24□□□□□ -0.93
VPS39-210ENST00000568357 TRGC2P03986 189 aa9.24□□□□□ -0.93
VPS39-210ENST00000568357 CXCL5P42830 114 aa9.24□□□□□ -0.93
VPS39-210ENST00000568357 CHCHD1Q96BP2 118 aaKnown RBP9.24□□□□□ -0.93
VPS39-210ENST00000568357 XAGE1AQ9HD64 81 aa9.24□□□□□ -0.93
VPS39-210ENST00000568357 ZNF22P17026 224 aaPredicted RBP9.23□□□□□ -0.93
VPS39-210ENST00000568357 C1orf137Q5JT78 98 aa9.23□□□□□ -0.93
VPS39-210ENST00000568357 IGLV5-39A0A0G2JS06 123 aa9.22□□□□□ -0.93
VPS39-210ENST00000568357 M0QXV9 152 aa9.22□□□□□ -0.93
VPS39-210ENST00000568357 C11orf86A6NJI1 115 aa9.21□□□□□ -0.94
VPS39-210ENST00000568357 COLCA2A8K830 154 aa9.21□□□□□ -0.94
VPS39-210ENST00000568357 LINC01600Q96MT4 127 aa9.21□□□□□ -0.94
VPS39-210ENST00000568357 FAM19A2Q8N3H0 131 aa9.2□□□□□ -0.94
VPS39-210ENST00000568357 TNXBP22105 4242 aa9.19□□□□□ -0.94
VPS39-210ENST00000568357 IFI27L1Q96BM0 104 aa9.19□□□□□ -0.94
VPS39-210ENST00000568357 CHTOPQ9Y3Y2 248 aaKnown RBP9.19□□□□□ -0.94
VPS39-210ENST00000568357 C22orf24Q9Y442 160 aa9.19□□□□□ -0.94
VPS39-210ENST00000568357 HSBP1O75506 76 aa9.18□□□□□ -0.94
VPS39-210ENST00000568357 IGLV7-43P04211 117 aa9.18□□□□□ -0.94
VPS39-210ENST00000568357 LINC00310P59036 64 aa9.18□□□□□ -0.94
VPS39-210ENST00000568357 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
VPS39-210ENST00000568357 TRAV12-1A0A0B4J245 112 aa9.17□□□□□ -0.94
VPS39-210ENST00000568357 UBE2BP63146 152 aa9.17□□□□□ -0.94
VPS39-210ENST00000568357 REG3GQ6UW15 175 aa9.17□□□□□ -0.94
VPS39-210ENST00000568357 NUPR1O60356 82 aa9.15□□□□□ -0.94
VPS39-210ENST00000568357 SERF1AO75920 110 aa9.15□□□□□ -0.94
VPS39-210ENST00000568357 PFN2P35080 140 aa9.14□□□□□ -0.95
VPS39-210ENST00000568357 KRTAP10-8P60410 259 aa9.14□□□□□ -0.95
VPS39-210ENST00000568357 TMEM223A0PJW6 202 aa9.13□□□□□ -0.95
VPS39-210ENST00000568357 SCO1O75880 301 aa9.13□□□□□ -0.95
VPS39-210ENST00000568357 ODF1Q14990 250 aa9.13□□□□□ -0.95
VPS39-210ENST00000568357 LBHQ53QV2 105 aaPredicted RBP9.13□□□□□ -0.95
VPS39-210ENST00000568357 ZNF625Q96I27 306 aaPredicted RBP9.13□□□□□ -0.95
VPS39-210ENST00000568357 TP73-AS1Q9UF72 201 aa9.13□□□□□ -0.95
VPS39-210ENST00000568357 MRPL55Q7Z7F7 128 aaKnown RBP9.12□□□□□ -0.95
VPS39-210ENST00000568357 ERG28Q9UKR5 140 aa9.12□□□□□ -0.95
VPS39-210ENST00000568357 LEPROTL1O95214 131 aa9.11□□□□□ -0.95
VPS39-210ENST00000568357 DIRC1Q969H9 104 aa9.11□□□□□ -0.95
VPS39-210ENST00000568357 LINC00167Q96N53 147 aa9.11□□□□□ -0.95
VPS39-210ENST00000568357 H0Y8G0 127 aa9.1□□□□□ -0.95
VPS39-210ENST00000568357 SND1-IT1Q9HBX3 110 aa9.1□□□□□ -0.95
VPS39-210ENST00000568357 IGLV5-37A0A075B6J1 123 aa9.09□□□□□ -0.95
VPS39-210ENST00000568357 RPL37AP8A6NKH3 93 aa9.09□□□□□ -0.95
VPS39-210ENST00000568357 H0Y9J4 135 aa9.09□□□□□ -0.95
VPS39-210ENST00000568357 COX17Q14061 63 aa9.09□□□□□ -0.95
VPS39-210ENST00000568357 GAGE10A6NGK3 116 aa9.08□□□□□ -0.96
VPS39-210ENST00000568357 FABP4P15090 132 aa9.08□□□□□ -0.96
VPS39-210ENST00000568357 SFTA2Q6UW10 78 aa9.07□□□□□ -0.96
VPS39-210ENST00000568357 KRTAP9-2Q9BYQ4 174 aa9.07□□□□□ -0.96
VPS39-210ENST00000568357 ZNF861PO60384 105 aa9.06□□□□□ -0.96
VPS39-210ENST00000568357 HSPB8Q9UJY1 196 aa9.06□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BKO60814 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BJP06899 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 KRTAP1-4P0C5Y4 121 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 VPREB1P12018 145 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms