RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CARHSP1Q9Y2V2 147 aaKnown RBP9.05□□□□□ -0.96
CLN3-213ENST00000565047 IGLV5-45A0A087WSX0 123 aa9.04□□□□□ -0.96
CLN3-213ENST00000565047 PAPPA-AS1Q5QFB9 102 aa9.04□□□□□ -0.96
CLN3-213ENST00000565047 COMMD7Q86VX2 200 aa9.04□□□□□ -0.96
CLN3-213ENST00000565047 SEC11AP67812 179 aa9.03□□□□□ -0.96
CLN3-213ENST00000565047 PACRGQ96M98 296 aaPredicted RBP9.03□□□□□ -0.96
CLN3-213ENST00000565047 SMIM1B2RUZ4 78 aa9.02□□□□□ -0.97
CLN3-213ENST00000565047 S100PP25815 95 aa9.02□□□□□ -0.97
CLN3-213ENST00000565047 C6orf226Q5I0X4 101 aa9.02□□□□□ -0.97
CLN3-213ENST00000565047 SCGB3A1Q96QR1 104 aa9.02□□□□□ -0.97
CLN3-213ENST00000565047 TINCRA0A1B0GVN0 87 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 M0QXV9 152 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 RHEBQ15382 184 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 COX19Q49B96 90 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 URB1-AS1Q96HZ7 61 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 MRPL18Q9H0U6 180 aaKnown RBP9.01□□□□□ -0.97
CLN3-213ENST00000565047 CST9LQ9H4G1 147 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 TOMM7Q9P0U1 55 aa9.01□□□□□ -0.97
CLN3-213ENST00000565047 A0A096LNJ9 63 aa9□□□□□ -0.97
CLN3-213ENST00000565047 LINC01549A6NIU2 74 aa9□□□□□ -0.97
CLN3-213ENST00000565047 PRSS2P07478 247 aa9□□□□□ -0.97
CLN3-213ENST00000565047 CKS1BP61024 79 aa9□□□□□ -0.97
CLN3-213ENST00000565047 GEMIN7Q9H840 131 aaKnown RBP9□□□□□ -0.97
CLN3-213ENST00000565047 F8VRH5 84 aa8.99□□□□□ -0.97
CLN3-213ENST00000565047 H0Y9J4 135 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 KRTAP1-4P0C5Y4 121 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 FABP9Q0Z7S8 132 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 PDZD11Q5EBL8 140 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 LINC00469Q8N7U9 141 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 RPS10P5Q9NQ39 176 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 LPAP08519 4548 aa8.98□□□□□ -0.97
CLN3-213ENST00000565047 DIRC1Q969H9 104 aa8.97□□□□□ -0.97
CLN3-213ENST00000565047 XAGE1AQ9HD64 81 aa8.97□□□□□ -0.97
CLN3-213ENST00000565047 C22orf24Q9Y442 160 aa8.97□□□□□ -0.97
CLN3-213ENST00000565047 CXCL5P42830 114 aa8.96□□□□□ -0.98
CLN3-213ENST00000565047 PMVKQ15126 192 aa8.96□□□□□ -0.98
CLN3-213ENST00000565047 FA2HQ7L5A8 372 aa8.95□□□□□ -0.98
CLN3-213ENST00000565047 C18orf32Q8TCD1 76 aa8.95□□□□□ -0.98
CLN3-213ENST00000565047 COX7B2Q8TF08 81 aa8.95□□□□□ -0.98
CLN3-213ENST00000565047 UBE2BP63146 152 aa8.94□□□□□ -0.98
CLN3-213ENST00000565047 SLC7A5P1Q8MH63 180 aa8.94□□□□□ -0.98
CLN3-213ENST00000565047 PRR26Q8N8Z3 221 aa8.94□□□□□ -0.98
CLN3-213ENST00000565047 YPEL4Q96NS1 127 aa8.94□□□□□ -0.98
CLN3-213ENST00000565047 SPINK8P0C7L1 97 aa8.93□□□□□ -0.98
CLN3-213ENST00000565047 IGLC3P0DOY3 106 aa8.93□□□□□ -0.98
CLN3-213ENST00000565047 TP73-AS1Q9UF72 201 aa8.93□□□□□ -0.98
CLN3-213ENST00000565047 IGLV5-39A0A0G2JS06 123 aa8.92□□□□□ -0.98
CLN3-213ENST00000565047 LINC00614P0C842 121 aa8.92□□□□□ -0.98
CLN3-213ENST00000565047 SMCO4Q9NRQ5 59 aa8.92□□□□□ -0.98
CLN3-213ENST00000565047 TRAPPC1Q9Y5R8 145 aa8.92□□□□□ -0.98
CLN3-213ENST00000565047 ZNF861PO60384 105 aa8.91□□□□□ -0.98
CLN3-213ENST00000565047 LBHQ53QV2 105 aaPredicted RBP8.9□□□□□ -0.98
CLN3-213ENST00000565047 MRPL55Q7Z7F7 128 aaKnown RBP8.9□□□□□ -0.98
CLN3-213ENST00000565047 IGLV1-50A0A075B6I6 118 aa8.89□□□□□ -0.99
CLN3-213ENST00000565047 IGLV5-37A0A075B6J1 123 aa8.89□□□□□ -0.99
CLN3-213ENST00000565047 NUPR1O60356 82 aa8.89□□□□□ -0.99
CLN3-213ENST00000565047 APOC3P02656 99 aa8.89□□□□□ -0.99
CLN3-213ENST00000565047 ZNF22P17026 224 aaPredicted RBP8.89□□□□□ -0.99
CLN3-213ENST00000565047 PMCHL1Q16048 86 aa8.89□□□□□ -0.99
CLN3-213ENST00000565047 HBDP02042 147 aa8.88□□□□□ -0.99
CLN3-213ENST00000565047 LINC00167Q96N53 147 aa8.88□□□□□ -0.99
CLN3-213ENST00000565047 H3BRM9 83 aa8.87□□□□□ -0.99
CLN3-213ENST00000565047 NDUFA5Q16718 116 aa8.87□□□□□ -0.99
CLN3-213ENST00000565047 SVBPQ8N300 66 aa8.87□□□□□ -0.99
CLN3-213ENST00000565047 SNAPINO95295 136 aa8.86□□□□□ -0.99
CLN3-213ENST00000565047 RAB5BP61020 215 aa8.86□□□□□ -0.99
CLN3-213ENST00000565047 C11orf86A6NJI1 115 aa8.85□□□□□ -0.99
CLN3-213ENST00000565047 BCE1O60756 84 aa8.85□□□□□ -0.99
CLN3-213ENST00000565047 KRTAP13-1Q8IUC0 172 aa8.85□□□□□ -0.99
CLN3-213ENST00000565047 RPL37AP8A6NKH3 93 aa8.84□□□□□ -0.99
CLN3-213ENST00000565047 ATP5LO75964 103 aa8.84□□□□□ -0.99
CLN3-213ENST00000565047 NDUFA6P56556 154 aa8.83□□□□□ -1
CLN3-213ENST00000565047 BAGE3Q86Y29 109 aa8.82□□□□□ -1
CLN3-213ENST00000565047 Q8NDZ9 215 aa8.82□□□□□ -1
CLN3-213ENST00000565047 ZNF625Q96I27 306 aaPredicted RBP8.82□□□□□ -1
CLN3-213ENST00000565047 GAGE10A6NGK3 116 aa8.81□□□□□ -1
CLN3-213ENST00000565047 SCO1O75880 301 aa8.81□□□□□ -1
CLN3-213ENST00000565047 VPREB1P12018 145 aa8.81□□□□□ -1
CLN3-213ENST00000565047 PFN2P35080 140 aa8.81□□□□□ -1
CLN3-213ENST00000565047 SND1-IT1Q9HBX3 110 aa8.81□□□□□ -1
CLN3-213ENST00000565047 ERG28Q9UKR5 140 aa8.81□□□□□ -1
CLN3-213ENST00000565047 A0A087X002 238 aa8.8□□□□□ -1
CLN3-213ENST00000565047 RPL13AP40429 203 aaKnown RBP8.8□□□□□ -1
CLN3-213ENST00000565047 RPL28P46779 137 aaKnown RBP8.8□□□□□ -1
CLN3-213ENST00000565047 COX17Q14061 63 aa8.8□□□□□ -1
CLN3-213ENST00000565047 CHCHD1Q96BP2 118 aaKnown RBP8.8□□□□□ -1
CLN3-213ENST00000565047 TRAV12-1A0A0B4J245 112 aa8.79□□□□□ -1
CLN3-213ENST00000565047 TMEM170BQ5T4T1 132 aa8.78□□□□□ -1
CLN3-213ENST00000565047 CHTOPQ9Y3Y2 248 aaKnown RBP8.78□□□□□ -1
CLN3-213ENST00000565047 TMEM223A0PJW6 202 aa8.77□□□□□ -1.01
CLN3-213ENST00000565047 NKAPP1Q8N9T2 125 aa8.77□□□□□ -1.01
CLN3-213ENST00000565047 MUC2Q02817 5179 aa8.77□□□□□ -1.01
CLN3-213ENST00000565047 IGKV2-28A0A075B6P5 120 aa8.76□□□□□ -1.01
CLN3-213ENST00000565047 IGKV2D-28P01615 120 aa8.76□□□□□ -1.01
CLN3-213ENST00000565047 CBLN2Q8IUK8 224 aa8.76□□□□□ -1.01
CLN3-213ENST00000565047 IFI27L1Q96BM0 104 aa8.76□□□□□ -1.01
CLN3-213ENST00000565047 LINC00310P59036 64 aa8.75□□□□□ -1.01
CLN3-213ENST00000565047 SFTA2Q6UW10 78 aa8.75□□□□□ -1.01
CLN3-213ENST00000565047 KRTAP13-2Q52LG2 175 aa8.74□□□□□ -1.01
CLN3-213ENST00000565047 ANAPC11Q9NYG5 84 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms