RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MYO7BQ6PIF6 2116 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 MDC1Q14676 2089 aaKnown RBP3.24□□□□□ -1.89
VPS35-205ENST00000563984 PTPRZ1P23471 2315 aaPredicted RBP3.24□□□□□ -1.89
VPS35-205ENST00000563984 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.24□□□□□ -1.89
VPS35-205ENST00000563984 PDE6HQ13956 83 aa3.24□□□□□ -1.89
VPS35-205ENST00000563984 Q6ZR54 194 aa3.24□□□□□ -1.89
VPS35-205ENST00000563984 CHD8Q9HCK8 2581 aa3.24□□□□□ -1.89
VPS35-205ENST00000563984 BAHCC1Q9P281 2608 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 ZDBF2Q9HCK1 2354 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 IGKV1D-37A0A075B6S9 117 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 IGHV3-64DA0A0J9YX35 117 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 CLPSL1A2RUU4 121 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 INSP01308 110 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 CTSGP08311 255 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 TLX1NBP0CAT3 122 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 PDE6GP18545 87 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 CNBPP62633 177 aaKnown RBP3.23□□□□□ -1.89
VPS35-205ENST00000563984 CACNA1BQ00975 2339 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 HIGD2BQ4VC39 106 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 LINC00483Q53H64 154 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 NTM-AS1Q6ZSK4 140 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 LYPD1Q8N2G4 141 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 C14orf178Q8N769 122 aaPredicted RBP3.23□□□□□ -1.89
VPS35-205ENST00000563984 KLHL30-AS1Q8NEE0 82 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 COX7B2Q8TF08 81 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 PLAC8Q9NZF1 115 aa3.23□□□□□ -1.89
VPS35-205ENST00000563984 ZFHX2Q9C0A1 2572 aaPredicted RBP3.23□□□□□ -1.89
VPS35-205ENST00000563984 MED13Q9UHV7 2174 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 IGKV1OR2-108A0A075B7D4 117 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 IGLV3-19P01714 112 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 DEFB113Q30KQ7 82 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 C1orf137Q5JT78 98 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 C15orf56Q8N910 161 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 DMAC1Q96GE9 116 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 LINC00167Q96N53 147 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 HIGD2AQ9BW72 106 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 CDH23Q9H251 3354 aa3.22□□□□□ -1.89
VPS35-205ENST00000563984 PRRC2AP48634 2157 aaKnown RBP3.22□□□□□ -1.89
VPS35-205ENST00000563984 IGLV2-18A0A075B6J9 118 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 IGKV3D-11A0A0A0MRZ8 115 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 H3BQ85 93 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 P0C880 135 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 C10orf113Q5VZT2 155 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 TMEM105Q8N8V8 129 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 ZCCHC13Q8WW36 166 aaKnown RBP3.21□□□□□ -1.9
VPS35-205ENST00000563984 DEFB126Q9BYW3 111 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 ZNRD1Q9P1U0 126 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 SPTBN4Q9H254 2564 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 SSC5DA1L4H1 1573 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 CEP192Q8TEP8 1941 aa3.21□□□□□ -1.9
VPS35-205ENST00000563984 A8MUU9 505 aa3.2□□□□□ -1.9
VPS35-205ENST00000563984 ODF3BA8MYP8 253 aa3.2□□□□□ -1.9
VPS35-205ENST00000563984 LYZP61626 148 aa3.2□□□□□ -1.9
VPS35-205ENST00000563984 WFDC10AQ9H1F0 79 aa3.2□□□□□ -1.9
VPS35-205ENST00000563984 HEATR5BQ9P2D3 2071 aa3.2□□□□□ -1.9
VPS35-205ENST00000563984 H0Y9P7 68 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 IGKV1-17P01599 117 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 ERHP84090 104 aaKnown RBP3.19□□□□□ -1.9
VPS35-205ENST00000563984 DEFB114Q30KQ6 69 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 KRTAP25-1Q3LHN0 102 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 LINC00322Q6ZN03 302 aaPredicted RBP3.19□□□□□ -1.9
VPS35-205ENST00000563984 TTTY12Q9BZ98 90 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 ARFGEF3Q5TH69 2177 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 CFAP54Q96N23 3096 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 USP34Q70CQ2 3546 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 PI4KAP42356 2102 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 ZGRF1Q86YA3 2104 aa3.19□□□□□ -1.9
VPS35-205ENST00000563984 WDFY4Q6ZS81 3184 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 XIRP2A4UGR9 3374 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 IGHV3-64A0A075B6Q5 118 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 LOC110117498A0A087WWA1 95 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 HAMPP81172 84 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 ZNF625Q96I27 306 aaPredicted RBP3.18□□□□□ -1.9
VPS35-205ENST00000563984 GAFA1Q96PS6 74 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 KLK9Q9UKQ9 250 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 ARHGAP32A7KAX9 2087 aa3.18□□□□□ -1.9
VPS35-205ENST00000563984 NUPR2A6NF83 97 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 MGPP08493 103 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 KRTAP26-1Q6PEX3 210 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 MINOS1-NBL1R4GNA1 71 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 SVILO95425 2214 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 CABIN1Q9Y6J0 2220 aa3.17□□□□□ -1.9
VPS35-205ENST00000563984 EPG5Q9HCE0 2579 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 IGLV4-69A0A075B6H9 119 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 H3BSH0 61 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 PANO1I0J062 215 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 UQCR11O14957 56 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 IGKV3-15P01624 115 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 IGHV3-53P01767 116 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 KRTAP12-2P59991 146 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 SMIM2Q9BVW6 85 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 CNFNQ9BYD5 112 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 INTS1Q8N201 2190 aaKnown RBP3.16□□□□□ -1.9
VPS35-205ENST00000563984 PRRC2BQ5JSZ5 2229 aaKnown RBP3.16□□□□□ -1.9
VPS35-205ENST00000563984 UNC79Q9P2D8 2635 aa3.16□□□□□ -1.9
VPS35-205ENST00000563984 C5orf42Q9H799 3197 aa3.15□□□□□ -1.9
VPS35-205ENST00000563984 DNAH12Q6ZR08 3092 aa3.15□□□□□ -1.9
VPS35-205ENST00000563984 NDUFA4O00483 81 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 KRTAP1-4P0C5Y4 121 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 P0C879 139 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms