RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 UBE2BP63146 152 aa10.38□□□□□ -0.75
VPS9D1-203ENST00000563798 CDKN2A-AS1Q9UH64 79 aa10.38□□□□□ -0.75
VPS9D1-203ENST00000563798 ALKBH7Q9BT30 221 aaPredicted RBP10.37□□□□□ -0.75
VPS9D1-203ENST00000563798 TOMM7Q9P0U1 55 aa10.37□□□□□ -0.75
VPS9D1-203ENST00000563798 ERASQ7Z444 233 aa10.36□□□□□ -0.75
VPS9D1-203ENST00000563798 LINC01546A6NGU7 62 aa10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 LINC01549A6NIU2 74 aa10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 F8VRH5 84 aa10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 ADCYAP1P18509 176 aa10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 UQCC3Q6UW78 93 aa10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 GEMIN7Q9H840 131 aaKnown RBP10.35□□□□□ -0.75
VPS9D1-203ENST00000563798 CXCL5P42830 114 aa10.34□□□□□ -0.75
VPS9D1-203ENST00000563798 C22orf24Q9Y442 160 aa10.34□□□□□ -0.75
VPS9D1-203ENST00000563798 IGLV5-45A0A087WSX0 123 aa10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 TMEM218A2RU14 115 aa10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 NUPR1O60356 82 aa10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 KIAA1644Q3SXP7 199 aa10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 LBHQ53QV2 105 aaPredicted RBP10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 TP73-AS1Q9UF72 201 aa10.33□□□□□ -0.76
VPS9D1-203ENST00000563798 TINCRA0A1B0GVN0 87 aa10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 ZNF861PO60384 105 aa10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 SCGB3A1Q96QR1 104 aa10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 GNB1LQ9BYB4 327 aa10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 XAGE1AQ9HD64 81 aa10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 CARHSP1Q9Y2V2 147 aaKnown RBP10.32□□□□□ -0.76
VPS9D1-203ENST00000563798 SMIM1B2RUZ4 78 aa10.31□□□□□ -0.76
VPS9D1-203ENST00000563798 RPL13AP40429 203 aaKnown RBP10.31□□□□□ -0.76
VPS9D1-203ENST00000563798 PDZD11Q5EBL8 140 aa10.31□□□□□ -0.76
VPS9D1-203ENST00000563798 LINC00469Q8N7U9 141 aa10.31□□□□□ -0.76
VPS9D1-203ENST00000563798 SEC11CQ9BY50 192 aa10.29□□□□□ -0.76
VPS9D1-203ENST00000563798 CST9LQ9H4G1 147 aa10.29□□□□□ -0.76
VPS9D1-203ENST00000563798 LPAP08519 4548 aa10.28□□□□□ -0.76
VPS9D1-203ENST00000563798 COX19Q49B96 90 aa10.28□□□□□ -0.76
VPS9D1-203ENST00000563798 MRPL55Q7Z7F7 128 aaKnown RBP10.28□□□□□ -0.76
VPS9D1-203ENST00000563798 S100PP25815 95 aa10.27□□□□□ -0.77
VPS9D1-203ENST00000563798 COX7B2Q8TF08 81 aa10.27□□□□□ -0.77
VPS9D1-203ENST00000563798 IFITM2Q01629 132 aa10.26□□□□□ -0.77
VPS9D1-203ENST00000563798 PMVKQ15126 192 aa10.25□□□□□ -0.77
VPS9D1-203ENST00000563798 IGLV5-37A0A075B6J1 123 aa10.24□□□□□ -0.77
VPS9D1-203ENST00000563798 BCE1O60756 84 aa10.24□□□□□ -0.77
VPS9D1-203ENST00000563798 MRPL18Q9H0U6 180 aaKnown RBP10.24□□□□□ -0.77
VPS9D1-203ENST00000563798 RPL28P46779 137 aaKnown RBP10.23□□□□□ -0.77
VPS9D1-203ENST00000563798 C10orf91Q5T1B1 145 aa10.22□□□□□ -0.77
VPS9D1-203ENST00000563798 FA2HQ7L5A8 372 aa10.22□□□□□ -0.77
VPS9D1-203ENST00000563798 LINC00167Q96N53 147 aa10.22□□□□□ -0.77
VPS9D1-203ENST00000563798 SPINK8P0C7L1 97 aa10.21□□□□□ -0.77
VPS9D1-203ENST00000563798 H3BRM9 83 aa10.2□□□□□ -0.78
VPS9D1-203ENST00000563798 IGLC3P0DOY3 106 aa10.2□□□□□ -0.78
VPS9D1-203ENST00000563798 FABP9Q0Z7S8 132 aa10.2□□□□□ -0.78
VPS9D1-203ENST00000563798 IGLV5-39A0A0G2JS06 123 aa10.19□□□□□ -0.78
VPS9D1-203ENST00000563798 RHEBQ15382 184 aa10.19□□□□□ -0.78
VPS9D1-203ENST00000563798 SMCO4Q9NRQ5 59 aa10.19□□□□□ -0.78
VPS9D1-203ENST00000563798 A0A096LNJ9 63 aa10.18□□□□□ -0.78
VPS9D1-203ENST00000563798 KRTAP13-1Q8IUC0 172 aa10.18□□□□□ -0.78
VPS9D1-203ENST00000563798 RPL37AP8A6NKH3 93 aa10.17□□□□□ -0.78
VPS9D1-203ENST00000563798 ATP5LO75964 103 aa10.17□□□□□ -0.78
VPS9D1-203ENST00000563798 RAB5BP61020 215 aa10.17□□□□□ -0.78
VPS9D1-203ENST00000563798 A0A087X002 238 aa10.16□□□□□ -0.78
VPS9D1-203ENST00000563798 COMMD7Q86VX2 200 aa10.16□□□□□ -0.78
VPS9D1-203ENST00000563798 URB1-AS1Q96HZ7 61 aa10.16□□□□□ -0.78
VPS9D1-203ENST00000563798 CRYGAP11844 174 aa10.15□□□□□ -0.78
VPS9D1-203ENST00000563798 NKAPP1Q8N9T2 125 aa10.15□□□□□ -0.78
VPS9D1-203ENST00000563798 GAGE10A6NGK3 116 aa10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 LINC00614P0C842 121 aa10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 ZNF22P17026 224 aaPredicted RBP10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 PRR4Q16378 134 aa10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 C18orf32Q8TCD1 76 aa10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 RPS10P5Q9NQ39 176 aa10.14□□□□□ -0.79
VPS9D1-203ENST00000563798 COX17Q14061 63 aa10.13□□□□□ -0.79
VPS9D1-203ENST00000563798 HBDP02042 147 aa10.12□□□□□ -0.79
VPS9D1-203ENST00000563798 VPREB1P12018 145 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 PFN2P35080 140 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 TYMSOSQ8TAI1 123 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 SND1-IT1Q9HBX3 110 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 ERG28Q9UKR5 140 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 TRAPPC1Q9Y5R8 145 aa10.11□□□□□ -0.79
VPS9D1-203ENST00000563798 NDUFA6P56556 154 aa10.1□□□□□ -0.79
VPS9D1-203ENST00000563798 FAM229BQ4G0N7 80 aa10.1□□□□□ -0.79
VPS9D1-203ENST00000563798 SFTA2Q6UW10 78 aa10.1□□□□□ -0.79
VPS9D1-203ENST00000563798 UBE2AP49459 152 aa10.09□□□□□ -0.79
VPS9D1-203ENST00000563798 IGKV2-28A0A075B6P5 120 aa10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 SCO1O75880 301 aa10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 TSPAN13O95857 204 aa10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 IGKV2D-28P01615 120 aa10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 RPL24P83731 157 aaKnown RBP10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 KRTAP13-2Q52LG2 175 aa10.08□□□□□ -0.8
VPS9D1-203ENST00000563798 C11orf86A6NJI1 115 aa10.07□□□□□ -0.8
VPS9D1-203ENST00000563798 BAGE3Q86Y29 109 aa10.07□□□□□ -0.8
VPS9D1-203ENST00000563798 ZNF625Q96I27 306 aaPredicted RBP10.07□□□□□ -0.8
VPS9D1-203ENST00000563798 ANAPC11Q9NYG5 84 aa10.07□□□□□ -0.8
VPS9D1-203ENST00000563798 PMCHL1Q16048 86 aa10.06□□□□□ -0.8
VPS9D1-203ENST00000563798 TMEM126AQ9H061 195 aa10.06□□□□□ -0.8
VPS9D1-203ENST00000563798 MUC2Q02817 5179 aa10.06□□□□□ -0.8
VPS9D1-203ENST00000563798 CTAG1AP78358 180 aa10.05□□□□□ -0.8
VPS9D1-203ENST00000563798 M0R378 163 aa10.04□□□□□ -0.8
VPS9D1-203ENST00000563798 Q8NDZ9 215 aa10.04□□□□□ -0.8
VPS9D1-203ENST00000563798 TMEM238C9JI98 176 aa10.03□□□□□ -0.8
VPS9D1-203ENST00000563798 PRLHP81277 87 aa10.03□□□□□ -0.8
VPS9D1-203ENST00000563798 TMEM170BQ5T4T1 132 aa10.03□□□□□ -0.8
VPS9D1-203ENST00000563798 FAM19A1Q7Z5A9 133 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms