RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 NDUFA6P56556 154 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 INSL4Q14641 139 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 MORN2Q502X0 79 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 UNQ6190/PRO20217Q6UXQ8 127 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 LINC00305Q7Z4B0 112 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 TTC9CQ8N5M4 171 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 DIRC1Q969H9 104 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 RAB37Q96AX2 223 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 JPT1Q9UK76 154 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 V9GYS6 101 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 TRAV2A0A0B4J234 112 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 FXYD6P3P58550 94 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 PSG9Q00887 426 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 VMA21Q3ZAQ7 101 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 RPL39P5Q59GN2 51 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 PSMG4Q5JS54 123 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 TP53RKQ96S44 253 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 USH2AO75445 5202 aa1.89□□□□□ -2.11
VPS13C-210ENST00000561258 MACF1Q9UPN3 7388 aaKnown RBP1.89□□□□□ -2.11
VPS13C-210ENST00000561258 LOC107984640A0A0U1RRK4 108 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 A0A1B0GX51 115 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 hDV103S1A0JD37 113 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 MT-ND6P03923 174 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 ZNF93P35789 620 aaPredicted RBP1.88□□□□□ -2.11
VPS13C-210ENST00000561258 KRTAP26-1Q6PEX3 210 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 IDO2Q6ZQW0 420 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 OTOSQ8NHW6 89 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 PP6455Q8WZ26 134 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 KRTAP4-1Q9BYQ7 146 aa1.88□□□□□ -2.11
VPS13C-210ENST00000561258 A0A096LPF7 62 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 TRBV27A0A0K0K1C4 114 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 CCDC160A6NGH7 325 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 H3BMG7 143 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 H3BNG1 76 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 LYRM1O43325 122 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 YPEL1O60688 119 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 PITX3O75364 302 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 IFNGP01579 166 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 SNRPD3P62318 126 aaKnown RBP1.87□□□□□ -2.11
VPS13C-210ENST00000561258 PIGYQ3MUY2 71 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 TEX261Q6UWH6 196 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 C2orf82Q6UX34 121 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 TMEM14EPQ6UXP3 125 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 OR5H6Q8NGV6 325 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 DPH3Q96FX2 82 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 GGACTQ9BVM4 153 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 NIT2Q9NQR4 276 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 U3KQ87 197 aa1.87□□□□□ -2.11
VPS13C-210ENST00000561258 TRAV13-1A0A0B4J241 112 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 MCRIP1C9JLW8 97 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 ARPC5O15511 151 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 ERC2-IT1O76042 136 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 MRPS36P82909 103 aaKnown RBP1.86□□□□□ -2.11
VPS13C-210ENST00000561258 WFDC2Q14508 124 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 Q56UQ5 140 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 RPL13AP3Q6NVV1 102 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 ARPINQ7Z6K5 226 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 Q8TAT8 98 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 PRELID3AQ96N28 172 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 TTTY10Q9BZA0 68 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 SPANXCQ9NY87 97 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 ABRACLQ9P1F3 81 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 KLK9Q9UKQ9 250 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 TIMM8BQ9Y5J9 83 aaPredicted RBP1.86□□□□□ -2.11
VPS13C-210ENST00000561258 NEBP20929 6669 aa1.86□□□□□ -2.11
VPS13C-210ENST00000561258 CD2P06729 351 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 HLA-DRB4P13762 266 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 HTN1P15515 57 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 SELENOWP63302 87 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 LINC01590Q5TEZ4 76 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 SPINK6Q6UWN8 80 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 WFDC10BQ8IUB3 73 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 TMEM167AQ8TBQ9 72 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 NOP10Q9NPE3 64 aaKnown RBP1.85□□□□□ -2.11
VPS13C-210ENST00000561258 R4GMQ9 66 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 HLA-DRB4X5D2U9 266 aa1.85□□□□□ -2.11
VPS13C-210ENST00000561258 IGKV3D-7A0A0C4DH55 119 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 IGKV3OR2-268A0A0C4DH90 116 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 M0R2T5 61 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 GEMIN2O14893 280 aaKnown RBP1.84□□□□□ -2.11
VPS13C-210ENST00000561258 FABP4P15090 132 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 FOXA3P55318 350 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-210ENST00000561258 MPV17LQ2QL34 196 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 Q5XG85 94 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 LYPD5Q6UWN5 251 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 S100A13Q99584 98 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 CGREF1Q99674 301 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 SLC35B3Q9H1N7 401 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 LINC00846Q9NV44 126 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 CCDC167Q9P0B6 97 aa1.84□□□□□ -2.11
VPS13C-210ENST00000561258 LOC110117498A0A087WWA1 95 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 BORCS7-ASMTA0A0B4J1R7 106 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 LOC107986453A0A1B0GWG9 222 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 TMEM14DPA8MWL7 114 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 SAA1P0DJI8 122 aaPredicted RBP1.83□□□□□ -2.12
VPS13C-210ENST00000561258 SMIM11AP58511 58 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 OR8I2Q8N0Y5 310 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 OR10AC1Q8NH08 325 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 ATP6V0E2Q8NHE4 81 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms