RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 IGLV5-39A0A0G2JS06 123 aa8.04□□□□□ -1.12
CUX1-218ENST00000560541 WFDC10AQ9H1F0 79 aa8.04□□□□□ -1.12
CUX1-218ENST00000560541 K7EQD1 137 aa8.04□□□□□ -1.12
CUX1-218ENST00000560541 MPLKIPQ8TAP9 179 aa8.04□□□□□ -1.12
CUX1-218ENST00000560541 LOC100131303A0A0U1RQF7 123 aa8.04□□□□□ -1.12
CUX1-218ENST00000560541 RBM3P98179 157 aaKnown RBP8.03□□□□□ -1.12
CUX1-218ENST00000560541 SERP1Q9Y6X1 66 aa8.03□□□□□ -1.12
CUX1-218ENST00000560541 DNAL4O96015 105 aa8.03□□□□□ -1.12
CUX1-218ENST00000560541 PLA2G2AP14555 144 aa8.03□□□□□ -1.12
CUX1-218ENST00000560541 S100A7L2Q5SY68 101 aa8.03□□□□□ -1.12
CUX1-218ENST00000560541 C14orf132Q9NPU4 83 aa8.02□□□□□ -1.13
CUX1-218ENST00000560541 CDC42SE2Q9NRR3 84 aa8.02□□□□□ -1.13
CUX1-218ENST00000560541 NBEAL2Q6ZNJ1 2754 aa8.02□□□□□ -1.13
CUX1-218ENST00000560541 GCN1Q92616 2671 aaKnown RBP8.02□□□□□ -1.13
CUX1-218ENST00000560541 LINC00846Q9NV44 126 aa8.02□□□□□ -1.13
CUX1-218ENST00000560541 TOMM7Q9P0U1 55 aa8.02□□□□□ -1.13
CUX1-218ENST00000560541 UBE2L6O14933 153 aa8.01□□□□□ -1.13
CUX1-218ENST00000560541 NDUFC2O95298 119 aa8.01□□□□□ -1.13
CUX1-218ENST00000560541 SMIM26A0A096LP01 95 aa8.01□□□□□ -1.13
CUX1-218ENST00000560541 SNURFQ9Y675 71 aa8.01□□□□□ -1.13
CUX1-218ENST00000560541 TRGV2A0A075B6R0 118 aa8□□□□□ -1.13
CUX1-218ENST00000560541 COX7A2LO14548 114 aa8□□□□□ -1.13
CUX1-218ENST00000560541 XCL1P47992 114 aa8□□□□□ -1.13
CUX1-218ENST00000560541 DEFB113Q30KQ7 82 aa8□□□□□ -1.13
CUX1-218ENST00000560541 CCL24O00175 119 aa8□□□□□ -1.13
CUX1-218ENST00000560541 BBC3Q96PG8 261 aaPredicted RBP8□□□□□ -1.13
CUX1-218ENST00000560541 C9orf129Q5T035 196 aaKnown RBP7.99□□□□□ -1.13
CUX1-218ENST00000560541 FAM218AQ96MZ4 157 aa7.99□□□□□ -1.13
CUX1-218ENST00000560541 TRBV10-1A0A0K0K1A3 114 aa7.98□□□□□ -1.13
CUX1-218ENST00000560541 DNAJC9-AS1A6NH13 148 aa7.98□□□□□ -1.13
CUX1-218ENST00000560541 RPL28P46779 137 aaKnown RBP7.98□□□□□ -1.13
CUX1-218ENST00000560541 LYPD5Q6UWN5 251 aa7.98□□□□□ -1.13
CUX1-218ENST00000560541 FAM19A1Q7Z5A9 133 aa7.98□□□□□ -1.13
CUX1-218ENST00000560541 C22orf24Q9Y442 160 aa7.98□□□□□ -1.13
CUX1-218ENST00000560541 GIG44P09565 113 aaPredicted RBP7.97□□□□□ -1.13
CUX1-218ENST00000560541 INAFM2P0DMQ5 153 aa7.97□□□□□ -1.13
CUX1-218ENST00000560541 MIR7-3HGQ8N6C7 128 aa7.97□□□□□ -1.13
CUX1-218ENST00000560541 ESM1Q9NQ30 184 aa7.97□□□□□ -1.13
CUX1-218ENST00000560541 IGLV4-60A0A075B6I1 120 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 TRGV4A0A0C4DH28 118 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 H7BZZ5 65 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 PMAIP1Q13794 54 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 Q6JHZ5 121 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 FAM19A3Q7Z5A8 133 aa7.96□□□□□ -1.14
CUX1-218ENST00000560541 C11orf68Q9H3H3 251 aaKnown RBP7.96□□□□□ -1.14
CUX1-218ENST00000560541 PLAC8L1A1L4L8 177 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 LINC00337Q8N6G1 96 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 COPS9Q8WXC6 57 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 RMI2Q96E14 147 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 LINC00158P58513 81 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 COX7B2Q8TF08 81 aa7.95□□□□□ -1.14
CUX1-218ENST00000560541 TRBV7-6A0A0J9YX20 115 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 NDUFC2-KCTD14E9PQ53 114 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 CRPP02741 224 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 C6orf226Q5I0X4 101 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 KRTAP1-3Q8IUG1 177 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 SND1-IT1Q9HBX3 110 aa7.94□□□□□ -1.14
CUX1-218ENST00000560541 F8WEM9 126 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 ITPR2Q14571 2701 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 IGKV2-28A0A075B6P5 120 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 IGKV2D-28P01615 120 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 HIST2H2BCQ6DN03 193 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 ENHOQ6UWT2 76 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 HIVEP2P31629 2446 aa7.93□□□□□ -1.14
CUX1-218ENST00000560541 EPM2AB3EWF7 344 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 CCKP06307 115 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 C16orf74Q96GX8 76 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 NCR3O14931 201 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 DEFB130BP0DP73 79 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 DEFB130AP0DP74 79 aa7.92□□□□□ -1.14
CUX1-218ENST00000560541 A0A087WYN8 130 aa7.91□□□□□ -1.14
CUX1-218ENST00000560541 CLPSL2Q6UWE3 100 aa7.91□□□□□ -1.14
CUX1-218ENST00000560541 TRBV6-8A0A0A6YYG3 113 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 TRAV13-2A0A0B4J235 113 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 CCL18P55774 89 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 ZNF843Q8N446 348 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 SMIM11BQ8TCY0 68 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 TRBV6-4A0A1B0GX49 114 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 TENM4Q6N022 2769 aa7.9□□□□□ -1.14
CUX1-218ENST00000560541 FAM229BQ4G0N7 80 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 LINC01006Q8NI28 216 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 VWFP04275 2813 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 A0A087WZ39 114 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 A0A096LPF7 62 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 IGHV3OR16-9A0A0B4J2B5 98 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 PAX4O43316 350 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 C19orf73Q9NVV2 129 aa7.89□□□□□ -1.15
CUX1-218ENST00000560541 CSNK1G2-AS1Q8NCQ2 148 aa7.88□□□□□ -1.15
CUX1-218ENST00000560541 SLPIP03973 132 aa7.88□□□□□ -1.15
CUX1-218ENST00000560541 ANK3Q12955 4377 aaKnown RBP7.88□□□□□ -1.15
CUX1-218ENST00000560541 LECT2O14960 151 aa7.86□□□□□ -1.15
CUX1-218ENST00000560541 IGLV1-51P01701 117 aa7.86□□□□□ -1.15
CUX1-218ENST00000560541 PF4P02776 101 aa7.86□□□□□ -1.15
CUX1-218ENST00000560541 FAM222AQ5U5X8 452 aa7.86□□□□□ -1.15
CUX1-218ENST00000560541 OVOL2Q9BRP0 275 aa7.86□□□□□ -1.15
CUX1-218ENST00000560541 NOTCH2Q04721 2471 aa7.85□□□□□ -1.15
CUX1-218ENST00000560541 LINC00959A0A1B0GUT2 108 aa7.85□□□□□ -1.15
CUX1-218ENST00000560541 GYPEP15421 78 aa7.85□□□□□ -1.15
CUX1-218ENST00000560541 LRCOL1A6NCL2 159 aa7.84□□□□□ -1.15
CUX1-218ENST00000560541 IBA57-AS1B1ANH7 110 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms