RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 D6R8Y8 96 aa5.52□□□□□ -1.53
HDDC3-204ENST00000559834 NDUFC2-KCTD14E9PQ53 114 aa5.52□□□□□ -1.53
HDDC3-204ENST00000559834 KRTAP11-1Q8IUC1 163 aa5.52□□□□□ -1.53
HDDC3-204ENST00000559834 PYGO1Q9Y3Y4 419 aa5.52□□□□□ -1.53
HDDC3-204ENST00000559834 NPYP01303 97 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 KRTAP1-4P0C5Y4 121 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 KIAA0087Q14695 138 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 LINC00242Q5T6M2 205 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 LINC01561Q8N1V8 128 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 HIST3H2BBQ8N257 126 aa5.51□□□□□ -1.53
HDDC3-204ENST00000559834 A0A0U1RQV1 116 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 ZNF861PO60384 105 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 PRSS2P07478 247 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 PDZD11Q5EBL8 140 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 MRPL54Q6P161 138 aaKnown RBP5.5□□□□□ -1.53
HDDC3-204ENST00000559834 TEX43Q6ZNM6 134 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 TMEM136Q6ZRR5 245 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 ORMDL3Q8N138 153 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 TMEM141Q96I45 108 aa5.5□□□□□ -1.53
HDDC3-204ENST00000559834 S100A2P29034 98 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 CKS1BP61024 79 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 S100A12P80511 92 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 LBHQ53QV2 105 aaPredicted RBP5.49□□□□□ -1.53
HDDC3-204ENST00000559834 C6orf226Q5I0X4 101 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 C2orf82Q6UX34 121 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 KRTAP7-1Q8IUC3 87 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 PRELID3AQ96N28 172 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 C2orf88Q9BSF0 95 aa5.49□□□□□ -1.53
HDDC3-204ENST00000559834 IGLV4-3A0A075B6K6 122 aa5.48□□□□□ -1.53
HDDC3-204ENST00000559834 A0A1B0GXF2 115 aa5.48□□□□□ -1.53
HDDC3-204ENST00000559834 NUPR1O60356 82 aa5.48□□□□□ -1.53
HDDC3-204ENST00000559834 C9orf129Q5T035 196 aaKnown RBP5.48□□□□□ -1.53
HDDC3-204ENST00000559834 Q6ZN92 141 aa5.48□□□□□ -1.53
HDDC3-204ENST00000559834 VCX2Q9H322 139 aa5.48□□□□□ -1.53
HDDC3-204ENST00000559834 TRAV9-1A0A075B6T8 112 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 PRSS47A8MTI9 375 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 FABP4P15090 132 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 PYY3Q5JQD4 70 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 ATP5L2Q7Z4Y8 100 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 TOMM7Q9P0U1 55 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 CYSLTR1Q9Y271 337 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 LAMTOR2Q9Y2Q5 125 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 C22orf24Q9Y442 160 aa5.47□□□□□ -1.53
HDDC3-204ENST00000559834 TSPAN13O95857 204 aa5.46□□□□□ -1.54
HDDC3-204ENST00000559834 NPSP0C0P6 89 aa5.46□□□□□ -1.54
HDDC3-204ENST00000559834 SEC11AP67812 179 aa5.46□□□□□ -1.54
HDDC3-204ENST00000559834 COA6Q5JTJ3 125 aaKnown RBP5.46□□□□□ -1.54
HDDC3-204ENST00000559834 ALKBH7Q9BT30 221 aaPredicted RBP5.46□□□□□ -1.54
HDDC3-204ENST00000559834 MAP1LC3AQ9H492 121 aa5.46□□□□□ -1.54
HDDC3-204ENST00000559834 TRAPPC1Q9Y5R8 145 aa5.46□□□□□ -1.54
HDDC3-204ENST00000559834 LOC389332A0A1B0GUA5 103 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 G0S2P27469 103 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 RPL28P46779 137 aaKnown RBP5.45□□□□□ -1.54
HDDC3-204ENST00000559834 ORMDL2Q53FV1 153 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 PAPPA-AS1Q5QFB9 102 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 C2orf66Q6UXQ4 117 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 Q8IZM0 81 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 LINC00469Q8N7U9 141 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 AMELXQ99217 191 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 HIST1H2BLQ99880 126 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 TP73-AS1Q9UF72 201 aa5.45□□□□□ -1.54
HDDC3-204ENST00000559834 LINC00587B1AMM8 73 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 K7EMI3 77 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 CRYGAP11844 174 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 HERVK_113P63121 156 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 Q8N8P6 123 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 MRPL18Q9H0U6 180 aaKnown RBP5.44□□□□□ -1.54
HDDC3-204ENST00000559834 XAGE1AQ9HD64 81 aa5.44□□□□□ -1.54
HDDC3-204ENST00000559834 F8VRH5 84 aa5.43□□□□□ -1.54
HDDC3-204ENST00000559834 BCE1O60756 84 aa5.43□□□□□ -1.54
HDDC3-204ENST00000559834 CXCL5P42830 114 aa5.43□□□□□ -1.54
HDDC3-204ENST00000559834 FAM19A3Q7Z5A8 133 aa5.43□□□□□ -1.54
HDDC3-204ENST00000559834 MRPL55Q7Z7F7 128 aaKnown RBP5.43□□□□□ -1.54
HDDC3-204ENST00000559834 TYMSOSQ8TAI1 123 aa5.43□□□□□ -1.54
HDDC3-204ENST00000559834 GEMIN7Q9H840 131 aaKnown RBP5.43□□□□□ -1.54
HDDC3-204ENST00000559834 IGIPA6NJ69 53 aa5.42□□□□□ -1.54
HDDC3-204ENST00000559834 CTAG1AP78358 180 aa5.42□□□□□ -1.54
HDDC3-204ENST00000559834 COX19Q49B96 90 aa5.42□□□□□ -1.54
HDDC3-204ENST00000559834 ZC2HC1BQ5TFG8 222 aa5.42□□□□□ -1.54
HDDC3-204ENST00000559834 LINC00173Q6ZV60 143 aa5.42□□□□□ -1.54
HDDC3-204ENST00000559834 JOSD1Q15040 202 aaPredicted RBP5.41□□□□□ -1.54
HDDC3-204ENST00000559834 NXT2Q9NPJ8 142 aaKnown RBP5.41□□□□□ -1.54
HDDC3-204ENST00000559834 CDKN2A-AS1Q9UH64 79 aa5.41□□□□□ -1.54
HDDC3-204ENST00000559834 LPAP08519 4548 aa5.41□□□□□ -1.54
HDDC3-204ENST00000559834 A0A087X002 238 aa5.4□□□□□ -1.54
HDDC3-204ENST00000559834 LINC00310P59036 64 aa5.4□□□□□ -1.54
HDDC3-204ENST00000559834 LINC00167Q96N53 147 aa5.4□□□□□ -1.54
HDDC3-204ENST00000559834 GNB1LQ9BYB4 327 aa5.4□□□□□ -1.54
HDDC3-204ENST00000559834 RPL37AP8A6NKH3 93 aa5.39□□□□□ -1.55
HDDC3-204ENST00000559834 SERF1AO75920 110 aa5.39□□□□□ -1.55
HDDC3-204ENST00000559834 UBE2AP49459 152 aa5.39□□□□□ -1.55
HDDC3-204ENST00000559834 TIMM17AQ99595 171 aa5.39□□□□□ -1.55
HDDC3-204ENST00000559834 PRO1933Q9H354 126 aa5.39□□□□□ -1.55
HDDC3-204ENST00000559834 KIAA1644Q3SXP7 199 aa5.38□□□□□ -1.55
HDDC3-204ENST00000559834 ERASQ7Z444 233 aa5.38□□□□□ -1.55
HDDC3-204ENST00000559834 BAGE3Q86Y29 109 aa5.38□□□□□ -1.55
HDDC3-204ENST00000559834 TOMM6Q96B49 74 aa5.38□□□□□ -1.55
HDDC3-204ENST00000559834 SCGB3A1Q96QR1 104 aa5.38□□□□□ -1.55
HDDC3-204ENST00000559834 GAGE10A6NGK3 116 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 LINC01549A6NIU2 74 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms