RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FAM218AQ96MZ4 157 aa5.09□□□□□ -1.59
USP3-210ENST00000559192 IGLV4-60A0A075B6I1 120 aa5.09□□□□□ -1.6
USP3-210ENST00000559192 SPART-AS1P0CW21 52 aa5.09□□□□□ -1.6
USP3-210ENST00000559192 LAMA1P25391 3075 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 SPAG11AQ6PDA7 123 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 TRBV6-4A0A1B0GX49 114 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 IGKV2-24A0A0C4DH68 120 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 HILS1P60008 231 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 ZNF575Q86XF7 245 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 LITAFQ99732 161 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 PRUNE2Q8WUY3 3088 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 CFAP54Q96N23 3096 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 LINC00337Q8N6G1 96 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 PTPRQQ9UMZ3 2332 aa5.08□□□□□ -1.6
USP3-210ENST00000559192 PCOTHQ58A44 107 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 LINC00846Q9NV44 126 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 CELSR3Q9NYQ7 3312 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 ZNF73O43830 326 aaPredicted RBP5.07□□□□□ -1.6
USP3-210ENST00000559192 NHLRC4P0CG21 123 aaPredicted RBP5.07□□□□□ -1.6
USP3-210ENST00000559192 C9orf116Q5BN46 136 aaPredicted RBP5.07□□□□□ -1.6
USP3-210ENST00000559192 PRO0255Q9UI72 69 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 SMCR5Q8TEV8 140 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 BBC3Q96PG8 261 aaPredicted RBP5.07□□□□□ -1.6
USP3-210ENST00000559192 PRRC2CQ9Y520 2896 aaKnown RBP5.07□□□□□ -1.6
USP3-210ENST00000559192 OTOGLQ3ZCN5 2332 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 ODF3L2Q3SX64 289 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 SPINK6Q6UWN8 80 aa5.07□□□□□ -1.6
USP3-210ENST00000559192 TRIOO75962 3097 aa5.06□□□□□ -1.6
USP3-210ENST00000559192 SORL1Q92673 2214 aa5.06□□□□□ -1.6
USP3-210ENST00000559192 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.06□□□□□ -1.6
USP3-210ENST00000559192 F8WDY8 70 aa5.06□□□□□ -1.6
USP3-210ENST00000559192 EIF4EBP3O60516 100 aaPredicted RBP5.06□□□□□ -1.6
USP3-210ENST00000559192 Q8N814 137 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 LINC01547P58512 204 aaPredicted RBP5.05□□□□□ -1.6
USP3-210ENST00000559192 IGKV2-28A0A075B6P5 120 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 BRI3O95415 125 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 IGKV2D-28P01615 120 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 LINC00482Q8N8I6 264 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 MDFIQ99750 246 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 IGLV5-39A0A0G2JS06 123 aa5.05□□□□□ -1.6
USP3-210ENST00000559192 PRRC2AP48634 2157 aaKnown RBP5.04□□□□□ -1.6
USP3-210ENST00000559192 C11orf72Q8NBR9 251 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 DHRS4-AS1Q9P1J3 65 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 CD164Q04900 197 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 C8orf87E5RJ46 101 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 H0Y9P7 68 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 Q6ZVQ6 151 aa5.04□□□□□ -1.6
USP3-210ENST00000559192 ZNF843Q8N446 348 aa5.03□□□□□ -1.6
USP3-210ENST00000559192 A8MTW9 85 aa5.03□□□□□ -1.6
USP3-210ENST00000559192 hDV103S1A0JD37 113 aa5.03□□□□□ -1.6
USP3-210ENST00000559192 Q8IZM0 81 aa5.03□□□□□ -1.6
USP3-210ENST00000559192 M0R378 163 aa5.02□□□□□ -1.61
USP3-210ENST00000559192 CD164L2Q6UWJ8 174 aa5.02□□□□□ -1.61
USP3-210ENST00000559192 SPINT4Q6UDR6 99 aa5.02□□□□□ -1.61
USP3-210ENST00000559192 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.02□□□□□ -1.61
USP3-210ENST00000559192 TTC28Q96AY4 2481 aa5.02□□□□□ -1.61
USP3-210ENST00000559192 C9orf66Q5T8R8 295 aa5.02□□□□□ -1.61
USP3-210ENST00000559192 HCG22E2RYF7 251 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 IGLV5-45A0A087WSX0 123 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 SPINK1P00995 79 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 FHL2Q14192 279 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 LINC00575Q6W349 94 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 C6orf223Q8N319 242 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 IL17DQ8TAD2 202 aa5.01□□□□□ -1.61
USP3-210ENST00000559192 TRBV10-3A0A0K0K1G6 114 aa5□□□□□ -1.61
USP3-210ENST00000559192 UNQ6190/PRO20217Q6UXQ8 127 aa5□□□□□ -1.61
USP3-210ENST00000559192 C1orf137Q5JT78 98 aa5□□□□□ -1.61
USP3-210ENST00000559192 KLK9Q2XQG4 91 aa5□□□□□ -1.61
USP3-210ENST00000559192 EYSQ5T1H1 3165 aa5□□□□□ -1.61
USP3-210ENST00000559192 VPS13AQ96RL7 3174 aa5□□□□□ -1.61
USP3-210ENST00000559192 COX17Q14061 63 aa5□□□□□ -1.61
USP3-210ENST00000559192 REV3LO60673 3130 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 A0A1B0GU69 56 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 SYCNQ0VAF6 134 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 RETNLBQ9BQ08 111 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 CYSRT1A8MQ03 144 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 ZNF706Q9Y5V0 76 aaPredicted RBP4.99□□□□□ -1.61
USP3-210ENST00000559192 C10orf25Q5T742 122 aa4.99□□□□□ -1.61
USP3-210ENST00000559192 LINC01561Q8N1V8 128 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 RPL37AP8A6NKH3 93 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 ATP11AUNQ6ZP68 121 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 KRTAP10-9P60411 292 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 LINC00336Q6ZUF6 198 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 LINC01006Q8NI28 216 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 SPG11Q96JI7 2443 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 C2CD3Q4AC94 2353 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 FREM2Q5SZK8 3169 aa4.98□□□□□ -1.61
USP3-210ENST00000559192 C1orf64Q8NEQ6 169 aa4.97□□□□□ -1.61
USP3-210ENST00000559192 X6R8D5 127 aa4.97□□□□□ -1.61
USP3-210ENST00000559192 MUC4Q99102 2169 aa4.97□□□□□ -1.61
USP3-210ENST00000559192 DEFB116Q30KQ4 102 aa4.97□□□□□ -1.61
USP3-210ENST00000559192 IGLV9-49A0A0B4J1Y8 123 aa4.97□□□□□ -1.61
USP3-210ENST00000559192 C14orf177Q52M58 125 aa4.96□□□□□ -1.61
USP3-210ENST00000559192 BCE1O60756 84 aa4.96□□□□□ -1.62
USP3-210ENST00000559192 SMIM29Q86T20 159 aa4.96□□□□□ -1.62
USP3-210ENST00000559192 IGHV6-1A0A0B4J1U7 121 aa4.96□□□□□ -1.62
USP3-210ENST00000559192 IGHV3OR16-9A0A0B4J2B5 98 aa4.96□□□□□ -1.62
USP3-210ENST00000559192 CSPG4Q6UVK1 2322 aa4.96□□□□□ -1.62
USP3-210ENST00000559192 MUC7Q8TAX7 377 aa4.95□□□□□ -1.62
USP3-210ENST00000559192 CUL9Q8IWT3 2517 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms