RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CHD6Q8TD26 2715 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 IGLV4-60A0A075B6I1 120 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 IGHV3OR16-9A0A0B4J2B5 98 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 IBA57-AS1B1ANH7 110 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 CRPP02741 224 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 SS18Q15532 418 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 NTN5Q8WTR8 489 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-206ENST00000558338 TLN2Q9Y4G6 2542 aa5.08□□□□□ -1.6
VPS13C-206ENST00000558338 LINC00959A0A1B0GUT2 108 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 SOSTDC1Q6X4U4 206 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 TOMM7Q9P0U1 55 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 IGKV3OR2-268A0A0C4DH90 116 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 INAFM1C9JVW0 142 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 TRACP01848 142 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 GAGE2BQ13066 116 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 GAGE2EQ4V326 116 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 GAGE2AQ6NT46 116 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 CLEC2BQ92478 149 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 GAGE2DQ9UEU5 116 aa5.07□□□□□ -1.6
VPS13C-206ENST00000558338 TRAV8-4A0A0B4J246 113 aa5.06□□□□□ -1.6
VPS13C-206ENST00000558338 MIFP14174 115 aa5.06□□□□□ -1.6
VPS13C-206ENST00000558338 MIR7-3HGQ8N6C7 128 aa5.06□□□□□ -1.6
VPS13C-206ENST00000558338 TENM4Q6N022 2769 aa5.06□□□□□ -1.6
VPS13C-206ENST00000558338 CCDC168Q8NDH2 2452 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 A0A1B0GV72 72 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 FAM240AA0A1B0GVK7 77 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 CXCL5P42830 114 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 RPL28P46779 137 aaKnown RBP5.05□□□□□ -1.6
VPS13C-206ENST00000558338 LINC00158P58513 81 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 DAD1P61803 113 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 Q8IZM0 81 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 SND1-IT1Q9HBX3 110 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 ATP5G1P05496 136 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 DEFB135Q30KP9 77 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 DEFB121Q5J5C9 76 aa5.05□□□□□ -1.6
VPS13C-206ENST00000558338 HIVEP2P31629 2446 aa5.04□□□□□ -1.6
VPS13C-206ENST00000558338 KMT2BQ9UMN6 2715 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-206ENST00000558338 IGHV4-28A0A0C4DH34 117 aa5.04□□□□□ -1.6
VPS13C-206ENST00000558338 C5orf38Q86SI9 138 aa5.04□□□□□ -1.6
VPS13C-206ENST00000558338 TEX49A0A1B0GTD5 131 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 SPART-AS1P0CW21 52 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 XGP55808 180 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 H0YGX0 51 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 SNCGO76070 127 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 MT-ATP8P03928 68 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 ACYP1P07311 99 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 XCL1P47992 114 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 COX17Q14061 63 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 Q8NAQ8 132 aa5.03□□□□□ -1.6
VPS13C-206ENST00000558338 CCL18P55774 89 aa5.02□□□□□ -1.61
VPS13C-206ENST00000558338 CKS1BP61024 79 aa5.02□□□□□ -1.61
VPS13C-206ENST00000558338 WFDC9Q8NEX5 89 aa5.02□□□□□ -1.61
VPS13C-206ENST00000558338 MUC7Q8TAX7 377 aa5.02□□□□□ -1.61
VPS13C-206ENST00000558338 CUBNO60494 3623 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 IGKV2-28A0A075B6P5 120 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 DNAL4O96015 105 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 IGKV2D-28P01615 120 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 INAFM2P0DMQ5 153 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 LELP1Q5T871 98 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 Q6Q795 121 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 SETXQ7Z333 2677 aaKnown RBP5.01□□□□□ -1.61
VPS13C-206ENST00000558338 UNC79Q9P2D8 2635 aa5.01□□□□□ -1.61
VPS13C-206ENST00000558338 A0A096LPF7 62 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 PFN2P35080 140 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 LINC00337Q8N6G1 96 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 ACANP16112 2415 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 NDUFC2O95298 119 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 ANGP03950 147 aaKnown RBP5□□□□□ -1.61
VPS13C-206ENST00000558338 BAALC-AS2P0C853 105 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 REG3AQ06141 175 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 CLPSL2Q6UWE3 100 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 LINC00269Q8N2A0 174 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 SMIM11BQ8TCY0 68 aa5□□□□□ -1.61
VPS13C-206ENST00000558338 CHCHD10Q8WYQ3 142 aaPredicted RBP5□□□□□ -1.61
VPS13C-206ENST00000558338 NF1P21359 2839 aa4.99□□□□□ -1.61
VPS13C-206ENST00000558338 NOTCH3Q9UM47 2321 aa4.99□□□□□ -1.61
VPS13C-206ENST00000558338 IGHV4-30-4P0DP06 118 aa4.99□□□□□ -1.61
VPS13C-206ENST00000558338 SPATA3Q8NHX4 192 aa4.99□□□□□ -1.61
VPS13C-206ENST00000558338 C11orf68Q9H3H3 251 aaKnown RBP4.99□□□□□ -1.61
VPS13C-206ENST00000558338 CELA1Q9UNI1 258 aa4.99□□□□□ -1.61
VPS13C-206ENST00000558338 A0A1B0GX51 115 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 DEFB4AO15263 64 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 C15orf53Q8NAA6 179 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 MTORP42345 2549 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 OR13C6PQ8NH95 151 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 FAM218AQ96MZ4 157 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 JMJD1CQ15652 2540 aa4.98□□□□□ -1.61
VPS13C-206ENST00000558338 H3BNG1 76 aa4.97□□□□□ -1.61
VPS13C-206ENST00000558338 KIAA0087Q14695 138 aa4.97□□□□□ -1.61
VPS13C-206ENST00000558338 KLK5Q9Y337 293 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-206ENST00000558338 ITPR2Q14571 2701 aa4.97□□□□□ -1.61
VPS13C-206ENST00000558338 HTN3P15516 51 aa4.96□□□□□ -1.61
VPS13C-206ENST00000558338 Q75L30 129 aa4.96□□□□□ -1.61
VPS13C-206ENST00000558338 MRAPQ8TCY5 172 aa4.96□□□□□ -1.61
VPS13C-206ENST00000558338 TMEM126AQ9H061 195 aa4.96□□□□□ -1.61
VPS13C-206ENST00000558338 PRR34Q9NV39 138 aa4.96□□□□□ -1.61
VPS13C-206ENST00000558338 FASNP49327 2511 aaKnown RBP4.96□□□□□ -1.62
VPS13C-206ENST00000558338 SPAG11BQ08648 103 aa4.96□□□□□ -1.62
VPS13C-206ENST00000558338 ANAPC13Q9BS18 74 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms