RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CTAG1AP78358 180 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 MRPS36P82909 103 aaKnown RBP5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 CIRBPQ14011 172 aaKnown RBP5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 COL5A1-AS1Q5SY13 56 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 SDIM1Q6ZPB5 146 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 TMEM243Q9BU79 118 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 LPAP08519 4548 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 A6NDN8 102 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 E9PLD3 99 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 CHTF8P0CG12 524 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 RPL39P62891 51 aaKnown RBP5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 MAJINQ3KP22 176 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 TMEM170BQ5T4T1 132 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 KRTAP26-1Q6PEX3 210 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 STPG4Q8N801 248 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 OR5A1Q8NGJ0 315 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 GEMIN7Q9H840 131 aaKnown RBP5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 HIGD1BQ9P298 99 aa5.18□□□□□ -1.58
CCDC88C-214ENST00000557507 IGLV4-3A0A075B6K6 122 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 TMEM262E9PQX1 116 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 ANGP03950 147 aaKnown RBP5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 LGALS3P17931 250 aaKnown RBP5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 HSD52Q0P140 79 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 BATFQ16520 125 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 TAL2Q16559 108 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 CLPSL2Q6UWE3 100 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 PLEKHB2Q96CS7 222 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 LINC01600Q96MT4 127 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 UBE2D4Q9Y2X8 147 aa5.17□□□□□ -1.58
CCDC88C-214ENST00000557507 A0A087WYN8 130 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 TRBV6-8A0A0A6YYG3 113 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 MYMXA0A1B0GTQ4 84 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 TINCRA0A1B0GVN0 87 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 HERVK_113P63121 156 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 MIAQ16674 131 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 ANKRD39Q53RE8 183 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 SCGB1D4Q6XE38 83 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 SPACA4Q8TDM5 124 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 AMELXQ99217 191 aa5.16□□□□□ -1.58
CCDC88C-214ENST00000557507 TMEM238LA0A1B0GVL6 79 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 A6NJY4 79 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 CCL25O15444 150 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 FGF6P10767 208 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 CNBPP62633 177 aaKnown RBP5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 LCE2CQ5TA81 110 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 CHCHD5Q9BSY4 110 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 SNHG12Q9BXW3 62 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 PRR34Q9NV39 138 aa5.15□□□□□ -1.59
CCDC88C-214ENST00000557507 IGHV3-64A0A075B6Q5 118 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 A0A0J9YXV3 536 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 IGKV2-29A2NJV5 120 aaPredicted RBP5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 LEPROTO15243 131 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 SLPIP03973 132 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 HINT1P49773 126 aaPredicted RBP5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 PRR3P79522 188 aaKnown RBP5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 COPS9Q8WXC6 57 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 PLAC8Q9NZF1 115 aa5.14□□□□□ -1.59
CCDC88C-214ENST00000557507 IGLV4-69A0A075B6H9 119 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 IGLV10-54A0A075B6I4 117 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 ZNF815PA8K554 130 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 J3QQQ9 107 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 PTTG1IPP53801 180 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 KRTAP10-8P60410 259 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 RBX1P62877 108 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 SFTA2Q6UW10 78 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 NTM-AS1Q6ZSK4 140 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 LINC00269Q8N2A0 174 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 LINC00469Q8N7U9 141 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 ORAOV1Q8WV07 137 aa5.13□□□□□ -1.59
CCDC88C-214ENST00000557507 TMEM223A0PJW6 202 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 UBE2D1P51668 147 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 GAGE6Q13070 117 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 SRSF9Q13242 221 aaKnown RBP eCLIP5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 BVES-AS1Q5T3Y7 98 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 FAM19A3Q7Z5A8 133 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 PCP2Q8IVA1 136 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 DPH3Q96FX2 82 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 HIST1H4GQ99525 98 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 CDC42SE2Q9NRR3 84 aa5.12□□□□□ -1.59
CCDC88C-214ENST00000557507 IGHV1-58A0A0C4DH39 117 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 A0A1B0GUV1 79 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 TMEM238C9JI98 176 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 ZNF22P17026 224 aaPredicted RBP5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 SS18Q15532 418 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 Q6ZUT4 128 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 Q6ZVH6 145 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 C7orf33Q8WU49 177 aa5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 OPRPNQ99935 248 aaPredicted RBP5.11□□□□□ -1.59
CCDC88C-214ENST00000557507 IGLV5-45A0A087WSX0 123 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 IGKV2D-26A0A0A0MRZ7 120 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 SMIM13P0DJ93 91 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 REG3AQ06141 175 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 C2orf91Q6ZV80 131 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 KRTAP9-2Q9BYQ4 174 aa5.1□□□□□ -1.59
CCDC88C-214ENST00000557507 MUC2Q02817 5179 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 TRAV13-1A0A0B4J241 112 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 IGKV2-24A0A0C4DH68 120 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 HERV-K104P63124 156 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms