RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 C11orf45Q8TAV5 145 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 MIR7-3HGQ8N6C7 128 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 CHCHD10Q8WYQ3 142 aaPredicted RBP4.08□□□□□ -1.76
SYNE2-225ENST00000557060 VPS25Q9BRG1 176 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 DEFB131BA0A096LNP1 70 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 IGLV5-39A0A0G2JS06 123 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 A0A1B0GWB2 263 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 TCL1BO95988 128 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 RPL13AP40429 203 aaKnown RBP4.07□□□□□ -1.76
SYNE2-225ENST00000557060 OCIAD2Q56VL3 154 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 SOSTDC1Q6X4U4 206 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 WIPF1O43516 503 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 CKS1BP61024 79 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 LINC00308Q8TCZ7 52 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 Q9HAA7 133 aa4.07□□□□□ -1.76
SYNE2-225ENST00000557060 TEX48A0A1B0GUV7 120 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 C6orf223Q8N319 242 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 CLEC2BQ92478 149 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 H7C423 109 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 PRR3P79522 188 aaKnown RBP4.06□□□□□ -1.76
SYNE2-225ENST00000557060 EGFEM1PQ0D2K5 195 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 LYPD5Q6UWN5 251 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 CDIP1Q9H305 208 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 A0A087WZ39 114 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.06□□□□□ -1.76
SYNE2-225ENST00000557060 GAGE12HA6NDE8 117 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 C9JAW5 83 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 COX7A2LO14548 114 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 TRIAP1O43715 76 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 CRPP02741 224 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 OR13C6PQ8NH95 151 aa4.06□□□□□ -1.76
SYNE2-225ENST00000557060 HIGD2BQ4VC39 106 aa4.05□□□□□ -1.76
SYNE2-225ENST00000557060 A0A1B0GUV1 79 aa4.05□□□□□ -1.76
SYNE2-225ENST00000557060 K7EIL1 84 aa4.05□□□□□ -1.76
SYNE2-225ENST00000557060 CFAP161Q6P656 301 aa4.05□□□□□ -1.76
SYNE2-225ENST00000557060 H3BS24 57 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 ESRGQ1W209 222 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 LELP1Q5T871 98 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 SND1-IT1Q9HBX3 110 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 TGP01266 2768 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 A0A1B0GV72 72 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 SPANXDQ9BXN6 97 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 SPANXCQ9NY87 97 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 CSMD3Q7Z407 3707 aa4.04□□□□□ -1.76
SYNE2-225ENST00000557060 A0A0B4J2C4 111 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 K7ERU9 68 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 C10orf25Q5T742 122 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 CD164L2Q6UWJ8 174 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 UNQ6190/PRO20217Q6UXQ8 127 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 IGKV2D-24A0A075B6R9 120 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 HERV-K104P63124 156 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 ENHOQ6UWT2 76 aa4.03□□□□□ -1.76
SYNE2-225ENST00000557060 CCL18P55774 89 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 SPAG11BQ08648 103 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 F8W1H4 67 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 LECT2O14960 151 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 COX6CP09669 75 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 LYRM7Q5U5X0 104 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 XAGE1AQ9HD64 81 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 IFITM1P13164 125 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 FAM19A3Q7Z5A8 133 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 LINC00337Q8N6G1 96 aa4.02□□□□□ -1.77
SYNE2-225ENST00000557060 SLC25A20O43772 301 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 FOXI1Q12951 378 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 SPATA25Q9BR10 227 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 NCR3O14931 201 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 TIMM17BO60830 172 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 PRO0461Q9UI25 63 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 LYSTQ99698 3801 aa4.01□□□□□ -1.77
SYNE2-225ENST00000557060 TRBV20-1A0A075B6N2 111 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 IGKV2-28A0A075B6P5 120 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 IGKV2D-28P01615 120 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 ATXN8Q156A1 80 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 Q8IZM0 81 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 ANKRD29Q8N6D5 301 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 MEGF8Q7Z7M0 2845 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 IBA57-AS1B1ANH7 110 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 ZNF561-AS1K7EIQ3 104 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 LINC01620Q4KN68 170 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 C1orf43Q9BWL3 253 aa4□□□□□ -1.77
SYNE2-225ENST00000557060 TEX49A0A1B0GTD5 131 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 KIAA0087Q14695 138 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 GAGE2EQ4V326 116 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 NTN5Q8WTR8 489 aaPredicted RBP3.99□□□□□ -1.77
SYNE2-225ENST00000557060 GAGE2DQ9UEU5 116 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 COPS9Q8WXC6 57 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 CAMK2N2Q96S95 79 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 PLA2G2DQ9UNK4 145 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 CMYA5Q8N3K9 4069 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 TRBV30A0A0K0K1B3 111 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 SMIM11BQ8TCY0 68 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 CARD19Q96LW7 228 aa3.99□□□□□ -1.77
SYNE2-225ENST00000557060 FAM218AQ96MZ4 157 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 PRR34Q9NV39 138 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 TRAV10A0A0B4J240 114 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 TRAV8-4A0A0B4J246 113 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 SLPIP03973 132 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 LORP23490 312 aaPredicted RBP3.98□□□□□ -1.77
SYNE2-225ENST00000557060 Q8NDZ9 215 aa3.98□□□□□ -1.77
SYNE2-225ENST00000557060 SVIPQ8NHG7 77 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms