RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 APOC4P55056 127 aa10.56□□□□□ -0.72
CUX1-215ENST00000556210 TIRAPP58753 221 aa10.56□□□□□ -0.72
CUX1-215ENST00000556210 COL6A5A8TX70 2615 aa10.56□□□□□ -0.72
CUX1-215ENST00000556210 M0QXV9 152 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 TIMM17BO60830 172 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 IGLV1-51P01701 117 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 HILS1P60008 231 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 A0A1B0GX51 115 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 C9orf116Q5BN46 136 aaPredicted RBP10.55□□□□□ -0.72
CUX1-215ENST00000556210 C9orf66Q5T8R8 295 aa10.55□□□□□ -0.72
CUX1-215ENST00000556210 NHLRC4P0CG21 123 aaPredicted RBP10.54□□□□□ -0.72
CUX1-215ENST00000556210 SDIM1Q6ZPB5 146 aa10.54□□□□□ -0.72
CUX1-215ENST00000556210 TRBV6-4A0A1B0GX49 114 aa10.54□□□□□ -0.72
CUX1-215ENST00000556210 PRB2P02812 416 aaPredicted RBP10.54□□□□□ -0.72
CUX1-215ENST00000556210 OXLD1Q5BKU9 147 aa10.54□□□□□ -0.72
CUX1-215ENST00000556210 FAM240AA0A1B0GVK7 77 aa10.53□□□□□ -0.72
CUX1-215ENST00000556210 ZNF561-AS1K7EIQ3 104 aa10.53□□□□□ -0.72
CUX1-215ENST00000556210 BEAN1Q3B7T3 259 aa10.53□□□□□ -0.72
CUX1-215ENST00000556210 Q8N2B8 174 aa10.53□□□□□ -0.72
CUX1-215ENST00000556210 HIGD2BQ4VC39 106 aa10.52□□□□□ -0.72
CUX1-215ENST00000556210 XAGE1AQ9HD64 81 aa10.52□□□□□ -0.72
CUX1-215ENST00000556210 TRACP01848 142 aa10.52□□□□□ -0.73
CUX1-215ENST00000556210 SPART-AS1P0CW21 52 aa10.52□□□□□ -0.73
CUX1-215ENST00000556210 FSHBP01225 129 aa10.51□□□□□ -0.73
CUX1-215ENST00000556210 Q8N3U1 123 aa10.51□□□□□ -0.73
CUX1-215ENST00000556210 LITAFQ99732 161 aa10.51□□□□□ -0.73
CUX1-215ENST00000556210 C1orf43Q9BWL3 253 aa10.51□□□□□ -0.73
CUX1-215ENST00000556210 IGHV4-28A0A0C4DH34 117 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 UQCRQO14949 82 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 REG3AQ06141 175 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 FHL2Q14192 279 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 CHCHD10Q8WYQ3 142 aaPredicted RBP10.5□□□□□ -0.73
CUX1-215ENST00000556210 IGKV2D-24A0A075B6R9 120 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 LINC00959A0A1B0GUT2 108 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 ATOX1O00244 68 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 C3orf22Q8N5N4 141 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 HIVEP1P15822 2718 aa10.5□□□□□ -0.73
CUX1-215ENST00000556210 H0YGX0 51 aa10.49□□□□□ -0.73
CUX1-215ENST00000556210 SPAG11BQ08648 103 aa10.49□□□□□ -0.73
CUX1-215ENST00000556210 DPH3Q96FX2 82 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 RETNQ9HD89 108 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 VPS13CQ709C8 3753 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 CCL18P55774 89 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 RPL18AQ02543 176 aaKnown RBP10.48□□□□□ -0.73
CUX1-215ENST00000556210 IMUPQ9GZP8 106 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 hADV29S1A0JD25 119 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 ORMDL1Q9P0S3 153 aa10.48□□□□□ -0.73
CUX1-215ENST00000556210 SOSTDC1Q6X4U4 206 aa10.47□□□□□ -0.73
CUX1-215ENST00000556210 SMIM11BQ8TCY0 68 aa10.46□□□□□ -0.73
CUX1-215ENST00000556210 KLK5Q9Y337 293 aaPredicted RBP10.46□□□□□ -0.74
CUX1-215ENST00000556210 HAMPP81172 84 aa10.45□□□□□ -0.74
CUX1-215ENST00000556210 J3KT08 172 aa10.44□□□□□ -0.74
CUX1-215ENST00000556210 CAMK2N2Q96S95 79 aa10.43□□□□□ -0.74
CUX1-215ENST00000556210 UBL5Q9BZL1 73 aa10.43□□□□□ -0.74
CUX1-215ENST00000556210 A8MTW9 85 aa10.43□□□□□ -0.74
CUX1-215ENST00000556210 DEFB105AQ8NG35 78 aa10.43□□□□□ -0.74
CUX1-215ENST00000556210 TRBV7-7A0A0K0K1E9 115 aa10.42□□□□□ -0.74
CUX1-215ENST00000556210 C6orf223Q8N319 242 aa10.42□□□□□ -0.74
CUX1-215ENST00000556210 KRTAP1-3Q8IUG1 177 aa10.42□□□□□ -0.74
CUX1-215ENST00000556210 LINC00337Q8N6G1 96 aa10.42□□□□□ -0.74
CUX1-215ENST00000556210 CR1P17927 2039 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 IGHV4-30-4P0DP06 118 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 PPDPFQ9H3Y8 114 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 COX7CP15954 63 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 C6orf99Q4VX62 202 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 UNQ6190/PRO20217Q6UXQ8 127 aa10.41□□□□□ -0.74
CUX1-215ENST00000556210 A0A087WVE0 104 aa10.4□□□□□ -0.74
CUX1-215ENST00000556210 FAM218AQ96MZ4 157 aa10.4□□□□□ -0.74
CUX1-215ENST00000556210 A0A087WYN8 130 aa10.4□□□□□ -0.74
CUX1-215ENST00000556210 GIG44P09565 113 aaPredicted RBP10.4□□□□□ -0.74
CUX1-215ENST00000556210 SPATA3Q8NHX4 192 aa10.4□□□□□ -0.74
CUX1-215ENST00000556210 NSD1Q96L73 2696 aaPredicted RBP10.4□□□□□ -0.75
CUX1-215ENST00000556210 CELA1Q9UNI1 258 aa10.39□□□□□ -0.75
CUX1-215ENST00000556210 IBA57-AS1B1ANH7 110 aa10.39□□□□□ -0.75
CUX1-215ENST00000556210 TRAV23DV6A0A075B6W5 121 aa10.39□□□□□ -0.75
CUX1-215ENST00000556210 IGLV5-39A0A0G2JS06 123 aa10.39□□□□□ -0.75
CUX1-215ENST00000556210 LOC107984640A0A0U1RRK4 108 aa10.38□□□□□ -0.75
CUX1-215ENST00000556210 ZFHX3Q15911 3703 aa10.38□□□□□ -0.75
CUX1-215ENST00000556210 RPL28P46779 137 aaKnown RBP10.37□□□□□ -0.75
CUX1-215ENST00000556210 IGHV3OR16-9A0A0B4J2B5 98 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 A0A087WZ39 114 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 LYRM9A8MSI8 78 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 USP17L23D6RBM5 183 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 C5orf47Q569G3 176 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 SMCR5Q8TEV8 140 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 PKIGQ9Y2B9 76 aa10.36□□□□□ -0.75
CUX1-215ENST00000556210 CSDC2Q9Y534 153 aaKnown RBP10.36□□□□□ -0.75
CUX1-215ENST00000556210 GHRHP01286 108 aa10.35□□□□□ -0.75
CUX1-215ENST00000556210 CXCL5P42830 114 aa10.35□□□□□ -0.75
CUX1-215ENST00000556210 IGLV5-45A0A087WSX0 123 aa10.35□□□□□ -0.75
CUX1-215ENST00000556210 WFDC9Q8NEX5 89 aa10.35□□□□□ -0.75
CUX1-215ENST00000556210 FAM104AQ969W3 186 aa10.35□□□□□ -0.75
CUX1-215ENST00000556210 CD164L2Q6UWJ8 174 aa10.34□□□□□ -0.75
CUX1-215ENST00000556210 C16orf95Q9H693 158 aa10.34□□□□□ -0.75
CUX1-215ENST00000556210 CYSRT1A8MQ03 144 aa10.33□□□□□ -0.76
CUX1-215ENST00000556210 SMIM9A6NGZ8 99 aa10.33□□□□□ -0.76
CUX1-215ENST00000556210 JMJD7-PLA2G4BH0Y9G9 81 aa10.33□□□□□ -0.76
CUX1-215ENST00000556210 LINC00846Q9NV44 126 aa10.33□□□□□ -0.76
CUX1-215ENST00000556210 KRTAP10-3P60369 221 aa10.33□□□□□ -0.76
CUX1-215ENST00000556210 SERP2Q8N6R1 65 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms