RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 BORCS7Q96B45 105 aa7.92□□□□□ -1.14
VPS29-209ENST00000551655 MACF1Q9UPN3 7388 aaKnown RBP7.92□□□□□ -1.14
VPS29-209ENST00000551655 A8MWL6 223 aa7.91□□□□□ -1.14
VPS29-209ENST00000551655 SMLR1H3BR10 107 aa7.91□□□□□ -1.14
VPS29-209ENST00000551655 A0A1B0GUT8 65 aa7.9□□□□□ -1.14
VPS29-209ENST00000551655 TMEM238C9JI98 176 aa7.9□□□□□ -1.14
VPS29-209ENST00000551655 TNFRSF6BO95407 300 aa7.9□□□□□ -1.14
VPS29-209ENST00000551655 C6orf226Q5I0X4 101 aa7.9□□□□□ -1.14
VPS29-209ENST00000551655 ZC2HC1BQ5TFG8 222 aa7.9□□□□□ -1.14
VPS29-209ENST00000551655 HIGD1CA8MV81 97 aa7.89□□□□□ -1.15
VPS29-209ENST00000551655 TCAPO15273 167 aa7.89□□□□□ -1.15
VPS29-209ENST00000551655 PPP1R2P9O14990 202 aa7.88□□□□□ -1.15
VPS29-209ENST00000551655 NKAPP1Q8N9T2 125 aa7.88□□□□□ -1.15
VPS29-209ENST00000551655 ALKBH7Q9BT30 221 aaPredicted RBP7.88□□□□□ -1.15
VPS29-209ENST00000551655 IGLV5-37A0A075B6J1 123 aa7.87□□□□□ -1.15
VPS29-209ENST00000551655 IGLV4-3A0A075B6K6 122 aa7.87□□□□□ -1.15
VPS29-209ENST00000551655 KRTAP4-16G5E9R7 235 aaPredicted RBP7.87□□□□□ -1.15
VPS29-209ENST00000551655 PPP1R17O96001 155 aa7.87□□□□□ -1.15
VPS29-209ENST00000551655 MRPL51Q4U2R6 128 aaKnown RBP7.87□□□□□ -1.15
VPS29-209ENST00000551655 Q8IZM0 81 aa7.87□□□□□ -1.15
VPS29-209ENST00000551655 TMEM126AQ9H061 195 aa7.87□□□□□ -1.15
VPS29-209ENST00000551655 F8VRH5 84 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 Q6ZN92 141 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 CBLN2Q8IUK8 224 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 LINC01561Q8N1V8 128 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 SPRR4Q96PI1 79 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 HIGD2AQ9BW72 106 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 NDUFA13Q9P0J0 144 aa7.86□□□□□ -1.15
VPS29-209ENST00000551655 SPINK1P00995 79 aa7.85□□□□□ -1.15
VPS29-209ENST00000551655 FAM231DQ6ZW35 169 aa7.85□□□□□ -1.15
VPS29-209ENST00000551655 Q8N377 158 aa7.85□□□□□ -1.15
VPS29-209ENST00000551655 SMIM2Q9BVW6 85 aa7.85□□□□□ -1.15
VPS29-209ENST00000551655 NDUFA12Q9UI09 145 aa7.85□□□□□ -1.15
VPS29-209ENST00000551655 IFI27P40305 119 aaPredicted RBP7.84□□□□□ -1.15
VPS29-209ENST00000551655 CT83Q5H943 113 aa7.84□□□□□ -1.15
VPS29-209ENST00000551655 C20orf78Q9BR46 151 aa7.84□□□□□ -1.15
VPS29-209ENST00000551655 M0R378 163 aa7.83□□□□□ -1.16
VPS29-209ENST00000551655 TMEM141Q96I45 108 aa7.83□□□□□ -1.16
VPS29-209ENST00000551655 RAB5BP61020 215 aa7.82□□□□□ -1.16
VPS29-209ENST00000551655 ZNF345Q14585 488 aa7.82□□□□□ -1.16
VPS29-209ENST00000551655 EIF5A2Q9GZV4 153 aaKnown RBP7.82□□□□□ -1.16
VPS29-209ENST00000551655 TRBV24-1A0A075B6N3 115 aa7.81□□□□□ -1.16
VPS29-209ENST00000551655 FAM104BQ5XKR9 115 aa7.81□□□□□ -1.16
VPS29-209ENST00000551655 COX6B2Q6YFQ2 88 aa7.81□□□□□ -1.16
VPS29-209ENST00000551655 TEX43Q6ZNM6 134 aa7.81□□□□□ -1.16
VPS29-209ENST00000551655 KANTRA0A1W2PQU2 76 aa7.8□□□□□ -1.16
VPS29-209ENST00000551655 NPYP01303 97 aa7.8□□□□□ -1.16
VPS29-209ENST00000551655 CKS2P33552 79 aa7.8□□□□□ -1.16
VPS29-209ENST00000551655 RIGQ13278 110 aa7.8□□□□□ -1.16
VPS29-209ENST00000551655 TEX46H3BTG2 121 aa7.79□□□□□ -1.16
VPS29-209ENST00000551655 CDKN2A-AS1Q9UH64 79 aa7.79□□□□□ -1.16
VPS29-209ENST00000551655 PYGO1Q9Y3Y4 419 aa7.79□□□□□ -1.16
VPS29-209ENST00000551655 FAM19A2Q8N3H0 131 aa7.78□□□□□ -1.16
VPS29-209ENST00000551655 C2orf88Q9BSF0 95 aa7.78□□□□□ -1.16
VPS29-209ENST00000551655 GNB1LQ9BYB4 327 aa7.78□□□□□ -1.16
VPS29-209ENST00000551655 KRTAP4-9Q9BYQ8 210 aa7.78□□□□□ -1.16
VPS29-209ENST00000551655 D6R8Y8 96 aa7.77□□□□□ -1.17
VPS29-209ENST00000551655 LINC00862A6NCI5 91 aa7.76□□□□□ -1.17
VPS29-209ENST00000551655 CEBPGP53567 150 aa7.76□□□□□ -1.17
VPS29-209ENST00000551655 C9orf92A6NGG3 77 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 SLC25A20O43772 301 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 VPREB1P12018 145 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 Q8NDZ9 215 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 AMELXQ99217 191 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 BATF3Q9NR55 127 aa7.75□□□□□ -1.17
VPS29-209ENST00000551655 CXCL5P42830 114 aa7.74□□□□□ -1.17
VPS29-209ENST00000551655 MOBPQ13875 183 aa7.74□□□□□ -1.17
VPS29-209ENST00000551655 EIF4EBP3O60516 100 aaPredicted RBP7.73□□□□□ -1.17
VPS29-209ENST00000551655 RAB5AP20339 215 aa7.73□□□□□ -1.17
VPS29-209ENST00000551655 C2orf66Q6UXQ4 117 aa7.73□□□□□ -1.17
VPS29-209ENST00000551655 LINC01551Q86U37 167 aa7.73□□□□□ -1.17
VPS29-209ENST00000551655 ZNF706Q9Y5V0 76 aaPredicted RBP7.73□□□□□ -1.17
VPS29-209ENST00000551655 V9GYV3 84 aa7.73□□□□□ -1.17
VPS29-209ENST00000551655 IGLV9-49A0A0B4J1Y8 123 aa7.72□□□□□ -1.17
VPS29-209ENST00000551655 SMIM1B2RUZ4 78 aa7.72□□□□□ -1.17
VPS29-209ENST00000551655 RPS29P62273 56 aaKnown RBP7.72□□□□□ -1.17
VPS29-209ENST00000551655 COX7B2Q8TF08 81 aa7.72□□□□□ -1.17
VPS29-209ENST00000551655 VCX2Q9H322 139 aa7.72□□□□□ -1.17
VPS29-209ENST00000551655 FAM19A3Q7Z5A8 133 aa7.71□□□□□ -1.18
VPS29-209ENST00000551655 OSTCQ9NRP0 149 aa7.71□□□□□ -1.18
VPS29-209ENST00000551655 HMSDA8MTL9 139 aa7.7□□□□□ -1.18
VPS29-209ENST00000551655 TMEM250H0YL14 139 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 PFN2P35080 140 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 TAGLN2P37802 199 aaKnown RBP7.69□□□□□ -1.18
VPS29-209ENST00000551655 RAB14P61106 215 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 HERVK_113P63121 156 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 KRTAP9-8Q9BYQ0 159 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 KRTAP4-2Q9BYR5 136 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 GEMIN7Q9H840 131 aaKnown RBP7.69□□□□□ -1.18
VPS29-209ENST00000551655 NAT8BQ9UHF3 227 aa7.69□□□□□ -1.18
VPS29-209ENST00000551655 SMCR5Q8TEV8 140 aa7.68□□□□□ -1.18
VPS29-209ENST00000551655 LOC389332A0A1B0GUA5 103 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 FAM74A3Q4VXF1 159 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 GAGE2AQ6NT46 116 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 SMIM7Q9BQ49 75 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 SND1-IT1Q9HBX3 110 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 CYSLTR1Q9Y271 337 aa7.67□□□□□ -1.18
VPS29-209ENST00000551655 IGIPA6NJ69 53 aa7.66□□□□□ -1.18
VPS29-209ENST00000551655 CFC1P0CG37 223 aa7.66□□□□□ -1.18
VPS29-209ENST00000551655 LINC00483Q53H64 154 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms