RNA–Protein interactions for RNA: ENST00000551391.1

SCAF11-215, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-215ENST00000551391 CPSF4LA6NMK7 179 aaKnown RBP-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 HMGN1P05114 100 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 AKAIN1P0CW23 69 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 UBE2L3P68036 154 aaKnown RBP-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 FAM223AQ8IWN6 122 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 PP6455Q8WZ26 134 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 FAM167A-AS1Q96KT0 104 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 TCHHQ07283 1943 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 DNAH3Q8TD57 4116 aa-0.94□□□□□ -2.56
SCAF11-215ENST00000551391 DNAH9Q9NYC9 4486 aa-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 DIP2CQ9Y2E4 1556 aa-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 ATP5EP56381 51 aaPredicted RBP-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 FAM107BQ9H098 131 aa-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 APOBP04114 4563 aaKnown RBP-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 DNAH2Q9P225 4427 aa-0.95□□□□□ -2.56
SCAF11-215ENST00000551391 ADAMTS12P58397 1594 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 PTPN23Q9H3S7 1636 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 CUL7Q14999 1698 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 UBA52P62987 128 aaKnown RBP-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 C9orf153Q5TBE3 101 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 LINC01600Q96MT4 127 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 ARL2-SNX15V9GYD0 113 aa-0.96□□□□□ -2.56
SCAF11-215ENST00000551391 LAMA1P25391 3075 aa-0.97□□□□□ -2.56
SCAF11-215ENST00000551391 H0YGG7 62 aa-0.97□□□□□ -2.56
SCAF11-215ENST00000551391 H1FX-AS1Q4G0G2 97 aa-0.97□□□□□ -2.56
SCAF11-215ENST00000551391 TACC2O95359 2948 aa-0.97□□□□□ -2.57
SCAF11-215ENST00000551391 TROQ12816 1431 aaPredicted RBP-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 NKTRP30414 1462 aaKnown RBP-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 MRC2Q9UBG0 1479 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 SLIT1O75093 1534 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 F6UZH7 168 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 PRO1933Q9H354 126 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 DPH3P1Q9H4G8 78 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 RNF213Q63HN8 5207 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 HECTD1Q9ULT8 2610 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 TNRC18O15417 2968 aaPredicted RBP-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 LAMA3Q16787 3333 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 A0A0G2JMZ2 1700 aa-0.98□□□□□ -2.57
SCAF11-215ENST00000551391 C1orf167Q5SNV9 1468 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 CCDC141Q6ZP82 1450 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 SCN7AQ01118 1682 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 UBE2D3P61077 147 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 UBE2D2P62837 147 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 NALCNQ8IZF0 1738 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 ANK3Q12955 4377 aaKnown RBP-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 SONP18583 2426 aaKnown RBP-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 ADGRL2O95490 1459 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 MYOM2P54296 1465 aa-0.99□□□□□ -2.57
SCAF11-215ENST00000551391 XRN1Q8IZH2 1706 aaKnown RBP-1□□□□□ -2.57
SCAF11-215ENST00000551391 GNG11P61952 73 aa-1□□□□□ -2.57
SCAF11-215ENST00000551391 FDCSPQ8NFU4 85 aa-1□□□□□ -2.57
SCAF11-215ENST00000551391 ROCK2O75116 1388 aaKnown RBP-1□□□□□ -2.57
SCAF11-215ENST00000551391 SCAPERQ9BY12 1400 aa-1□□□□□ -2.57
SCAF11-215ENST00000551391 CUBNO60494 3623 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 RYR2Q92736 4967 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 FAM24AA6NFZ4 105 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 C9orf92A6NGG3 77 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 H3BNG1 76 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 COX6CP09669 75 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 MT1HP80294 61 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 Q0VG73 95 aa-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 PLECQ15149 4684 aaKnown RBP-1.01□□□□□ -2.57
SCAF11-215ENST00000551391 ITPR3Q14573 2671 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 I3L3M4 83 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 TRIOO75962 3097 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 NUP188Q5SRE5 1749 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 AKAP9Q99996 3911 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 SPTBN4Q9H254 2564 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 CRIPTQ9P021 101 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 DNAH11Q96DT5 4516 aa-1.02□□□□□ -2.57
SCAF11-215ENST00000551391 A0A1B0GWA3 101 aa-1.03□□□□□ -2.57
SCAF11-215ENST00000551391 CCL22O00626 93 aa-1.03□□□□□ -2.57
SCAF11-215ENST00000551391 LCN9Q8WX39 176 aa-1.03□□□□□ -2.57
SCAF11-215ENST00000551391 MANBALQ9NQG1 85 aa-1.03□□□□□ -2.57
SCAF11-215ENST00000551391 IER3IP1Q9Y5U9 82 aa-1.03□□□□□ -2.57
SCAF11-215ENST00000551391 PRRC2CQ9Y520 2896 aaKnown RBP-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 USP9YO00507 2555 aaPredicted RBP-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 FAM223BA6NKX1 122 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 DEFA5Q01523 94 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 MRPL34Q9BQ48 92 aaKnown RBP-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 CDKN2A-AS1Q9UH64 79 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 PRO1854Q9UHT4 67 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 FMN2Q9NZ56 1722 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 TOP2BQ02880 1626 aa-1.04□□□□□ -2.58
SCAF11-215ENST00000551391 EDC4Q6P2E9 1401 aaKnown RBP-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 AKAP13Q12802 2813 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 VPS13BQ7Z7G8 4022 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 EPG5Q9HCE0 2579 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 NAP1L6A6NFF2 107 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 TRAPPC2P0DI81 140 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 TRAPPC2BP0DI82 140 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 SEC11AP67812 179 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 LINC00846Q9NV44 126 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 CICQ96RK0 1608 aaPredicted RBP-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 LYSTQ99698 3801 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 PLEKHH2Q8IVE3 1493 aa-1.05□□□□□ -2.58
SCAF11-215ENST00000551391 NCOA3Q9Y6Q9 1424 aa-1.06□□□□□ -2.58
SCAF11-215ENST00000551391 DOPEY1Q5JWR5 2465 aa-1.06□□□□□ -2.58
SCAF11-215ENST00000551391 COL4A6Q14031 1691 aa-1.06□□□□□ -2.58
SCAF11-215ENST00000551391 SNAPC5O75971 98 aa-1.06□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms