RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 C9orf116Q5BN46 136 aaPredicted RBP11.59□□□□□ -0.55
CUX1-213ENST00000549414 C16orf95Q9H693 158 aa11.59□□□□□ -0.55
CUX1-213ENST00000549414 TRAV10A0A0B4J240 114 aa11.58□□□□□ -0.55
CUX1-213ENST00000549414 LST1O00453 97 aa11.58□□□□□ -0.55
CUX1-213ENST00000549414 HIGD2AQ9BW72 106 aa11.58□□□□□ -0.55
CUX1-213ENST00000549414 SS18L2Q9UHA2 77 aa11.58□□□□□ -0.56
CUX1-213ENST00000549414 LY6G6CO95867 125 aa11.58□□□□□ -0.56
CUX1-213ENST00000549414 JMJD7-PLA2G4BH0Y9G9 81 aa11.58□□□□□ -0.56
CUX1-213ENST00000549414 SMIM11BQ8TCY0 68 aa11.58□□□□□ -0.56
CUX1-213ENST00000549414 FLNCQ14315 2725 aa11.57□□□□□ -0.56
CUX1-213ENST00000549414 TMEM256-PLSCR3K7ERE1 68 aa11.57□□□□□ -0.56
CUX1-213ENST00000549414 LELP1Q5T871 98 aa11.57□□□□□ -0.56
CUX1-213ENST00000549414 COX7BP24311 80 aa11.57□□□□□ -0.56
CUX1-213ENST00000549414 KALRNO60229 2985 aa11.57□□□□□ -0.56
CUX1-213ENST00000549414 CFAP47Q6ZTR5 3102 aa11.56□□□□□ -0.56
CUX1-213ENST00000549414 A0A1B0GX51 115 aa11.56□□□□□ -0.56
CUX1-213ENST00000549414 IGSF10Q6WRI0 2623 aa11.56□□□□□ -0.56
CUX1-213ENST00000549414 PRR3P79522 188 aaKnown RBP11.56□□□□□ -0.56
CUX1-213ENST00000549414 UNQ6190/PRO20217Q6UXQ8 127 aa11.55□□□□□ -0.56
CUX1-213ENST00000549414 ZZEF1O43149 2961 aa11.55□□□□□ -0.56
CUX1-213ENST00000549414 LINC01546A6NGU7 62 aa11.54□□□□□ -0.56
CUX1-213ENST00000549414 BAHCC1Q9P281 2608 aa11.54□□□□□ -0.56
CUX1-213ENST00000549414 NOTCH1P46531 2555 aa11.54□□□□□ -0.56
CUX1-213ENST00000549414 TNRC18O15417 2968 aaPredicted RBP11.53□□□□□ -0.56
CUX1-213ENST00000549414 NTM-AS1Q6ZSK4 140 aa11.53□□□□□ -0.56
CUX1-213ENST00000549414 COL12A1Q99715 3063 aa11.53□□□□□ -0.56
CUX1-213ENST00000549414 FUSP35637 526 aaKnown RBP eCLIP11.53□□□□□ -0.561e-7■■■■□ 22.5
CUX1-213ENST00000549414 KLK9Q2XQG4 91 aa11.53□□□□□ -0.56
CUX1-213ENST00000549414 SDIM1Q6ZPB5 146 aa11.53□□□□□ -0.56
CUX1-213ENST00000549414 CYSRT1A8MQ03 144 aa11.52□□□□□ -0.56
CUX1-213ENST00000549414 XGP55808 180 aa11.52□□□□□ -0.56
CUX1-213ENST00000549414 LINC00643Q86TS7 51 aa11.52□□□□□ -0.56
CUX1-213ENST00000549414 Q6ZTC4 211 aa11.52□□□□□ -0.57
CUX1-213ENST00000549414 A0A087WZ39 114 aa11.51□□□□□ -0.57
CUX1-213ENST00000549414 SYCNQ0VAF6 134 aa11.51□□□□□ -0.57
CUX1-213ENST00000549414 IGKV2-28A0A075B6P5 120 aa11.51□□□□□ -0.57
CUX1-213ENST00000549414 IGKV2D-28P01615 120 aa11.51□□□□□ -0.57
CUX1-213ENST00000549414 FSHBP01225 129 aa11.51□□□□□ -0.57
CUX1-213ENST00000549414 NREPQ16612 68 aa11.5□□□□□ -0.57
CUX1-213ENST00000549414 CSDC2Q9Y534 153 aaKnown RBP11.5□□□□□ -0.57
CUX1-213ENST00000549414 Q8IZM0 81 aa11.5□□□□□ -0.57
CUX1-213ENST00000549414 FHL3Q13643 280 aa11.5□□□□□ -0.57
CUX1-213ENST00000549414 NBEAL1Q6ZS30 2694 aa11.5□□□□□ -0.57
CUX1-213ENST00000549414 LOC400499M0QZD8 3231 aa11.49□□□□□ -0.57
CUX1-213ENST00000549414 Q6ZQY7 126 aa11.49□□□□□ -0.57
CUX1-213ENST00000549414 GCN1Q92616 2671 aaKnown RBP11.49□□□□□ -0.57
CUX1-213ENST00000549414 FAM19A5Q7Z5A7 132 aaPredicted RBP11.48□□□□□ -0.57
CUX1-213ENST00000549414 DMXL1Q9Y485 3027 aa11.48□□□□□ -0.57
CUX1-213ENST00000549414 NDUFS5O43920 106 aa11.47□□□□□ -0.57
CUX1-213ENST00000549414 SCXQ7RTU7 201 aa11.47□□□□□ -0.57
CUX1-213ENST00000549414 TRAV23DV6A0A075B6W5 121 aa11.47□□□□□ -0.57
CUX1-213ENST00000549414 NDUFV3P56181 108 aaKnown RBP11.47□□□□□ -0.57
CUX1-213ENST00000549414 C6orf223Q8N319 242 aa11.46□□□□□ -0.57
CUX1-213ENST00000549414 UBR5O95071 2799 aaPredicted RBP11.46□□□□□ -0.58
CUX1-213ENST00000549414 ATOX1O00244 68 aa11.45□□□□□ -0.58
CUX1-213ENST00000549414 CELA1Q9UNI1 258 aa11.45□□□□□ -0.58
CUX1-213ENST00000549414 LRBAP50851 2863 aa11.45□□□□□ -0.58
CUX1-213ENST00000549414 A0A096LNT2 108 aa11.45□□□□□ -0.58
CUX1-213ENST00000549414 PKIGQ9Y2B9 76 aa11.45□□□□□ -0.58
CUX1-213ENST00000549414 C14orf177Q52M58 125 aa11.44□□□□□ -0.58
CUX1-213ENST00000549414 TACC2O95359 2948 aa11.44□□□□□ -0.58
CUX1-213ENST00000549414 USP34Q70CQ2 3546 aa11.43□□□□□ -0.58
CUX1-213ENST00000549414 CITED1Q99966 193 aa11.43□□□□□ -0.58
CUX1-213ENST00000549414 WFDC10BQ8IUB3 73 aa11.42□□□□□ -0.58
CUX1-213ENST00000549414 SMIM20Q8N5G0 67 aa11.42□□□□□ -0.58
CUX1-213ENST00000549414 C4orf48Q5BLP8 95 aa11.42□□□□□ -0.58
CUX1-213ENST00000549414 UNC79Q9P2D8 2635 aa11.42□□□□□ -0.58
CUX1-213ENST00000549414 FAM19A1Q7Z5A9 133 aa11.41□□□□□ -0.58
CUX1-213ENST00000549414 A0A087WYN8 130 aa11.41□□□□□ -0.58
CUX1-213ENST00000549414 RPL37AP8A6NKH3 93 aa11.41□□□□□ -0.58
CUX1-213ENST00000549414 KRTAP24-1Q3LI83 254 aa11.4□□□□□ -0.58
CUX1-213ENST00000549414 LINC00337Q8N6G1 96 aa11.39□□□□□ -0.59
CUX1-213ENST00000549414 ENHOQ6UWT2 76 aa11.39□□□□□ -0.59
CUX1-213ENST00000549414 IGHV3OR16-9A0A0B4J2B5 98 aa11.39□□□□□ -0.59
CUX1-213ENST00000549414 IGLV5-39A0A0G2JS06 123 aa11.39□□□□□ -0.59
CUX1-213ENST00000549414 A8MTW9 85 aa11.38□□□□□ -0.59
CUX1-213ENST00000549414 UPK3BQ9BT76 320 aa11.38□□□□□ -0.59
CUX1-213ENST00000549414 A0A1B0GUV1 79 aa11.38□□□□□ -0.59
CUX1-213ENST00000549414 Q8N3U1 123 aa11.38□□□□□ -0.59
CUX1-213ENST00000549414 RPL28P46779 137 aaKnown RBP11.37□□□□□ -0.59
CUX1-213ENST00000549414 COX17Q14061 63 aa11.37□□□□□ -0.59
CUX1-213ENST00000549414 TRBV10-3A0A0K0K1G6 114 aa11.37□□□□□ -0.59
CUX1-213ENST00000549414 ZNF73O43830 326 aaPredicted RBP11.36□□□□□ -0.59
CUX1-213ENST00000549414 PPDPFQ9H3Y8 114 aa11.36□□□□□ -0.59
CUX1-213ENST00000549414 C3orf84H3BNL1 204 aa11.36□□□□□ -0.59
CUX1-213ENST00000549414 PDE6GP18545 87 aa11.36□□□□□ -0.59
CUX1-213ENST00000549414 LYPD5Q6UWN5 251 aa11.36□□□□□ -0.59
CUX1-213ENST00000549414 H3BQ85 93 aa11.35□□□□□ -0.59
CUX1-213ENST00000549414 CCKP06307 115 aa11.35□□□□□ -0.59
CUX1-213ENST00000549414 X6R8D5 127 aa11.35□□□□□ -0.59
CUX1-213ENST00000549414 M0R378 163 aa11.35□□□□□ -0.59
CUX1-213ENST00000549414 SMCPP49901 116 aaPredicted RBP11.34□□□□□ -0.59
CUX1-213ENST00000549414 WFDC9Q8NEX5 89 aa11.34□□□□□ -0.59
CUX1-213ENST00000549414 SOSTDC1Q6X4U4 206 aa11.33□□□□□ -0.6
CUX1-213ENST00000549414 BPY2O14599 106 aa11.33□□□□□ -0.6
CUX1-213ENST00000549414 ITPR1Q14643 2758 aa11.33□□□□□ -0.6
CUX1-213ENST00000549414 B9D2Q9BPU9 175 aa11.33□□□□□ -0.6
CUX1-213ENST00000549414 C20orf197Q8N268 126 aa11.32□□□□□ -0.6
CUX1-213ENST00000549414 Q8N814 137 aa11.3□□□□□ -0.6
CUX1-213ENST00000549414 EGFEM1PQ0D2K5 195 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms