RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MRPL55Q7Z7F7 128 aaKnown RBP7.32□□□□□ -1.24
SCAF11-208ENST00000546534 TRBV24-1A0A075B6N3 115 aa7.31□□□□□ -1.24
SCAF11-208ENST00000546534 CEBPGP53567 150 aa7.31□□□□□ -1.24
SCAF11-208ENST00000546534 SMIM2Q9BVW6 85 aa7.31□□□□□ -1.24
SCAF11-208ENST00000546534 TP73-AS1Q9UF72 201 aa7.31□□□□□ -1.24
SCAF11-208ENST00000546534 LINC00862A6NCI5 91 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 RPL37AP8A6NKH3 93 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 TNFRSF6BO95407 300 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 FAM229BQ4G0N7 80 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 LINC01551Q86U37 167 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 KRTAP4-1Q9BYQ7 146 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 OSTCQ9NRP0 149 aa7.3□□□□□ -1.24
SCAF11-208ENST00000546534 CKS2P33552 79 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 CKS1BP61024 79 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 RGS21Q2M5E4 152 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 KRTAP13-1Q8IUC0 172 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 LINC01561Q8N1V8 128 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 LINC00167Q96N53 147 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 TOMM7Q9P0U1 55 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 V9GYV3 84 aa7.29□□□□□ -1.24
SCAF11-208ENST00000546534 IGLV4-3A0A075B6K6 122 aa7.28□□□□□ -1.24
SCAF11-208ENST00000546534 IGKV2D-26A0A0A0MRZ7 120 aa7.28□□□□□ -1.24
SCAF11-208ENST00000546534 PRSS2P07478 247 aa7.28□□□□□ -1.24
SCAF11-208ENST00000546534 CTAG1AP78358 180 aa7.28□□□□□ -1.24
SCAF11-208ENST00000546534 C6orf226Q5I0X4 101 aa7.28□□□□□ -1.24
SCAF11-208ENST00000546534 IFI27P40305 119 aaPredicted RBP7.27□□□□□ -1.25
SCAF11-208ENST00000546534 UBE2AP49459 152 aa7.27□□□□□ -1.25
SCAF11-208ENST00000546534 ASB16-AS1Q495Z4 193 aa7.27□□□□□ -1.25
SCAF11-208ENST00000546534 SMIM7Q9BQ49 75 aa7.27□□□□□ -1.25
SCAF11-208ENST00000546534 PYGO1Q9Y3Y4 419 aa7.27□□□□□ -1.25
SCAF11-208ENST00000546534 GAGE10A6NGK3 116 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 NPYP01303 97 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 BLOC1S1P78537 153 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 Q6ZN92 141 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 Q8IZM0 81 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 TMEM141Q96I45 108 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 NAT8BQ9UHF3 227 aa7.26□□□□□ -1.25
SCAF11-208ENST00000546534 D6R8Y8 96 aa7.25□□□□□ -1.25
SCAF11-208ENST00000546534 ZC2HC1BQ5TFG8 222 aa7.25□□□□□ -1.25
SCAF11-208ENST00000546534 LINC00337Q8N6G1 96 aa7.25□□□□□ -1.25
SCAF11-208ENST00000546534 ALKBH7Q9BT30 221 aaPredicted RBP7.25□□□□□ -1.25
SCAF11-208ENST00000546534 EIF5A2Q9GZV4 153 aaKnown RBP7.25□□□□□ -1.25
SCAF11-208ENST00000546534 KRTAP13-3Q3SY46 172 aa7.24□□□□□ -1.25
SCAF11-208ENST00000546534 TEX43Q6ZNM6 134 aa7.24□□□□□ -1.25
SCAF11-208ENST00000546534 SLC51BQ86UW2 128 aa7.24□□□□□ -1.25
SCAF11-208ENST00000546534 F8VRH5 84 aa7.23□□□□□ -1.25
SCAF11-208ENST00000546534 RAB5AP20339 215 aa7.23□□□□□ -1.25
SCAF11-208ENST00000546534 FAM74A3Q4VXF1 159 aa7.23□□□□□ -1.25
SCAF11-208ENST00000546534 C3orf22Q8N5N4 141 aa7.23□□□□□ -1.25
SCAF11-208ENST00000546534 PNRC1Q12796 327 aaPredicted RBP7.22□□□□□ -1.25
SCAF11-208ENST00000546534 FP248Q71RG6 208 aaPredicted RBP7.22□□□□□ -1.25
SCAF11-208ENST00000546534 BATF3Q9NR55 127 aa7.22□□□□□ -1.25
SCAF11-208ENST00000546534 A0A1B0GW15 77 aa7.21□□□□□ -1.26
SCAF11-208ENST00000546534 TRIAP1O43715 76 aa7.21□□□□□ -1.26
SCAF11-208ENST00000546534 C2orf88Q9BSF0 95 aa7.21□□□□□ -1.26
SCAF11-208ENST00000546534 IGLV5-37A0A075B6J1 123 aa7.2□□□□□ -1.26
SCAF11-208ENST00000546534 SMIM27A0A1W2PRY6 76 aa7.2□□□□□ -1.26
SCAF11-208ENST00000546534 PRLHP81277 87 aa7.2□□□□□ -1.26
SCAF11-208ENST00000546534 AMELXQ99217 191 aa7.2□□□□□ -1.26
SCAF11-208ENST00000546534 IGKV2-28A0A075B6P5 120 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 IGKV2D-28P01615 120 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 PPBPP02775 128 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 SEC61BP60468 96 aaKnown RBP7.19□□□□□ -1.26
SCAF11-208ENST00000546534 MRPL54Q6P161 138 aaKnown RBP7.19□□□□□ -1.26
SCAF11-208ENST00000546534 C2orf66Q6UXQ4 117 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 VCX2Q9H322 139 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 CDKN2A-AS1Q9UH64 79 aa7.19□□□□□ -1.26
SCAF11-208ENST00000546534 F8W036 122 aa7.18□□□□□ -1.26
SCAF11-208ENST00000546534 SCO1O75880 301 aa7.18□□□□□ -1.26
SCAF11-208ENST00000546534 SRP19P09132 144 aaKnown RBP7.18□□□□□ -1.26
SCAF11-208ENST00000546534 SPAG11AQ6PDA7 123 aa7.18□□□□□ -1.26
SCAF11-208ENST00000546534 FAM19A3Q7Z5A8 133 aa7.18□□□□□ -1.26
SCAF11-208ENST00000546534 NKAPP1Q8N9T2 125 aa7.18□□□□□ -1.26
SCAF11-208ENST00000546534 CXCL5P42830 114 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 RPL23P62829 140 aaKnown RBP7.17□□□□□ -1.26
SCAF11-208ENST00000546534 ALKAL2Q6UX46 152 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 FAM19A1Q7Z5A9 133 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 PLEKHB2Q96CS7 222 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 PRELID3AQ96N28 172 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 CYSLTR1Q9Y271 337 aa7.17□□□□□ -1.26
SCAF11-208ENST00000546534 A0A1B0GXF2 115 aa7.16□□□□□ -1.26
SCAF11-208ENST00000546534 S100A8P05109 93 aa7.16□□□□□ -1.26
SCAF11-208ENST00000546534 HERVK_113P63121 156 aa7.16□□□□□ -1.26
SCAF11-208ENST00000546534 TMEM136Q6ZRR5 245 aa7.16□□□□□ -1.26
SCAF11-208ENST00000546534 ORMDL3Q8N138 153 aa7.16□□□□□ -1.26
SCAF11-208ENST00000546534 LOC389332A0A1B0GUA5 103 aa7.15□□□□□ -1.26
SCAF11-208ENST00000546534 TMEM238C9JI98 176 aa7.15□□□□□ -1.26
SCAF11-208ENST00000546534 RAB5BP61020 215 aa7.15□□□□□ -1.26
SCAF11-208ENST00000546534 ADIRFQ15847 76 aa7.15□□□□□ -1.26
SCAF11-208ENST00000546534 IGIPA6NJ69 53 aa7.14□□□□□ -1.27
SCAF11-208ENST00000546534 PRSS47A8MTI9 375 aa7.14□□□□□ -1.27
SCAF11-208ENST00000546534 TMEM126AQ9H061 195 aa7.14□□□□□ -1.27
SCAF11-208ENST00000546534 GEMIN7Q9H840 131 aaKnown RBP7.14□□□□□ -1.27
SCAF11-208ENST00000546534 SMIM1B2RUZ4 78 aa7.13□□□□□ -1.27
SCAF11-208ENST00000546534 NPSP0C0P6 89 aa7.13□□□□□ -1.27
SCAF11-208ENST00000546534 SEC11AP67812 179 aa7.13□□□□□ -1.27
SCAF11-208ENST00000546534 TCTE3Q8IZS6 198 aa7.13□□□□□ -1.27
SCAF11-208ENST00000546534 MT1HP80294 61 aa7.12□□□□□ -1.27
SCAF11-208ENST00000546534 KRTAP19-2Q3LHN2 52 aa7.12□□□□□ -1.27
SCAF11-208ENST00000546534 CBLN2Q8IUK8 224 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms