RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 A0A1B0GUV1 79 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 CASC2Q6XLA1 102 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 IL17DQ8TAD2 202 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 C11orf45Q8TAV5 145 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 Q8N3U1 123 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.07□□□□□ -1.76
VPS50-220ENST00000544910 TMEM254Q8TBM7 123 aa4.07□□□□□ -1.76
VPS50-220ENST00000544910 C3orf84H3BNL1 204 aa4.06□□□□□ -1.76
VPS50-220ENST00000544910 CXCL6P80162 114 aa4.06□□□□□ -1.76
VPS50-220ENST00000544910 FAM30AQ9NZY2 134 aa4.06□□□□□ -1.76
VPS50-220ENST00000544910 ZNF73O43830 326 aaPredicted RBP4.06□□□□□ -1.76
VPS50-220ENST00000544910 IGHV4-30-4P0DP06 118 aa4.05□□□□□ -1.76
VPS50-220ENST00000544910 CACNA1BQ00975 2339 aa4.05□□□□□ -1.76
VPS50-220ENST00000544910 LIMD2Q9BT23 127 aa4.05□□□□□ -1.76
VPS50-220ENST00000544910 LINC00846Q9NV44 126 aa4.05□□□□□ -1.76
VPS50-220ENST00000544910 TTC28Q96AY4 2481 aa4.05□□□□□ -1.76
VPS50-220ENST00000544910 DEFB131BA0A096LNP1 70 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 C4orf26Q17RF5 130 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 KPRPQ5T749 579 aaPredicted RBP4.04□□□□□ -1.76
VPS50-220ENST00000544910 SPTBN1Q01082 2364 aaKnown RBP4.04□□□□□ -1.76
VPS50-220ENST00000544910 PRR4Q16378 134 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 A0A0C4DFX4 3053 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 C14orf177Q52M58 125 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 LINC00337Q8N6G1 96 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 USP34Q70CQ2 3546 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 PLAC8L1A1L4L8 177 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 WFDC13Q8IUB5 93 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 CYSRT1A8MQ03 144 aa4.04□□□□□ -1.76
VPS50-220ENST00000544910 hDV103S1A0JD37 113 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 PSPHP1O15172 72 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 C9orf116Q5BN46 136 aaPredicted RBP4.03□□□□□ -1.76
VPS50-220ENST00000544910 LINC01547P58512 204 aaPredicted RBP4.03□□□□□ -1.76
VPS50-220ENST00000544910 XAGE1AQ9HD64 81 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 FAM19A1Q7Z5A9 133 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 IGHV3OR16-9A0A0B4J2B5 98 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 Q6ZVQ6 151 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 HIGD2AQ9BW72 106 aa4.03□□□□□ -1.76
VPS50-220ENST00000544910 PIEZO2Q9H5I5 2752 aa4.03□□□□□ -1.77
VPS50-220ENST00000544910 UNQ6190/PRO20217Q6UXQ8 127 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 X6R8D5 127 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 DOPEY2Q9Y3R5 2298 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 LRCOL1A6NCL2 159 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 PRR3P79522 188 aaKnown RBP4.02□□□□□ -1.77
VPS50-220ENST00000544910 LINC00208Q96KT6 92 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 CELA1Q9UNI1 258 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 SYCNQ0VAF6 134 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 CSNK1G2-AS1Q8NCQ2 148 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 KRTAP1-3Q8IUG1 177 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 C6orf223Q8N319 242 aa4.02□□□□□ -1.77
VPS50-220ENST00000544910 A0A0J9YWU9 116 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 VPREB1P12018 145 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 TRAV10A0A0B4J240 114 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 C4orf48Q5BLP8 95 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 LYPD5Q6UWN5 251 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 FAM218AQ96MZ4 157 aa4.01□□□□□ -1.77
VPS50-220ENST00000544910 NANOS2P60321 138 aaKnown RBP4.01□□□□□ -1.77
VPS50-220ENST00000544910 MED13LQ71F56 2210 aa4□□□□□ -1.77
VPS50-220ENST00000544910 LINC00575Q6W349 94 aa4□□□□□ -1.77
VPS50-220ENST00000544910 BDP1A6H8Y1 2624 aa4□□□□□ -1.77
VPS50-220ENST00000544910 A0A1B0GW54 56 aa4□□□□□ -1.77
VPS50-220ENST00000544910 EGFEM1PQ0D2K5 195 aa4□□□□□ -1.77
VPS50-220ENST00000544910 OXLD1Q5BKU9 147 aa4□□□□□ -1.77
VPS50-220ENST00000544910 C1orf137Q5JT78 98 aa4□□□□□ -1.77
VPS50-220ENST00000544910 F8WDY8 70 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 EIF4EBP3O60516 100 aaPredicted RBP3.99□□□□□ -1.77
VPS50-220ENST00000544910 GIG44P09565 113 aaPredicted RBP3.99□□□□□ -1.77
VPS50-220ENST00000544910 ZNF706Q9Y5V0 76 aaPredicted RBP3.99□□□□□ -1.77
VPS50-220ENST00000544910 MUC4Q99102 2169 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 VCANP13611 3396 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 CREBBPQ92793 2442 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 NBASA2RRP1 2371 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 IGKV2-28A0A075B6P5 120 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 IGKV2D-28P01615 120 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 LAMA1P25391 3075 aa3.99□□□□□ -1.77
VPS50-220ENST00000544910 AGRNO00468 2067 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 Q6ZTC4 211 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 C10orf25Q5T742 122 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 C19orf73Q9NVV2 129 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 IGF2RP11717 2491 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 C2orf48Q96LS8 159 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 HCG22E2RYF7 251 aa3.98□□□□□ -1.77
VPS50-220ENST00000544910 TNRC18O15417 2968 aaPredicted RBP3.97□□□□□ -1.77
VPS50-220ENST00000544910 H0Y9P7 68 aa3.97□□□□□ -1.77
VPS50-220ENST00000544910 FAM104AQ969W3 186 aa3.97□□□□□ -1.77
VPS50-220ENST00000544910 KRTAP10-3P60369 221 aa3.97□□□□□ -1.77
VPS50-220ENST00000544910 PRUNE2Q8WUY3 3088 aa3.97□□□□□ -1.77
VPS50-220ENST00000544910 SPTAN1Q13813 2472 aaKnown RBP3.97□□□□□ -1.77
VPS50-220ENST00000544910 ERC2-IT1O76042 136 aa3.97□□□□□ -1.77
VPS50-220ENST00000544910 H3BPC8 53 aa3.96□□□□□ -1.77
VPS50-220ENST00000544910 Q8NAQ8 132 aa3.96□□□□□ -1.77
VPS50-220ENST00000544910 IGKV2-24A0A0C4DH68 120 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 LINC00612Q8N6U2 182 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 LOC110117498A0A087WWA1 95 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 SERTAD4-AS1Q5TG53 156 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 H3BNG1 76 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 WIPF1O43516 503 aa3.96□□□□□ -1.78
VPS50-220ENST00000544910 NHLRC4P0CG21 123 aaPredicted RBP3.96□□□□□ -1.78
VPS50-220ENST00000544910 RPL37AP8A6NKH3 93 aa3.95□□□□□ -1.78
VPS50-220ENST00000544910 KRTAP1-1Q07627 177 aa3.95□□□□□ -1.78
VPS50-220ENST00000544910 PRRC2AP48634 2157 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms