RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ZNF702PQ9H963 129 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 IGHV7-4-1A0A0J9YVY3 117 aa7.93□□□□□ -1.14
CDH3-203ENST00000542274 COX7A2LO14548 114 aa7.93□□□□□ -1.14
CDH3-203ENST00000542274 C9orf47Q6ZRZ4 202 aa7.93□□□□□ -1.14
CDH3-203ENST00000542274 OVOL2Q9BRP0 275 aa7.93□□□□□ -1.14
CDH3-203ENST00000542274 DEFB136Q30KP8 78 aa7.93□□□□□ -1.14
CDH3-203ENST00000542274 PHF5AQ7RTV0 110 aaKnown RBP7.93□□□□□ -1.14
CDH3-203ENST00000542274 H3BUA1 57 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 M0R381 172 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 TMEM61Q8N0U2 210 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 SMIM2Q9BVW6 85 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 BCE1O60756 84 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 LCA10Q71F78 164 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 ZFAND2AQ8N6M9 145 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 ESM1Q9NQ30 184 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 PHLDA3Q9Y5J5 127 aa7.92□□□□□ -1.14
CDH3-203ENST00000542274 HIVEP1P15822 2718 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 WNK1Q9H4A3 2382 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 A0A0J9YXY3 114 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 IGKV3-20P01619 116 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 SDHAF1A6NFY7 115 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 DNAJC9-AS1A6NH13 148 aa7.91□□□□□ -1.14
CDH3-203ENST00000542274 IGHV3-64A0A075B6Q5 118 aa7.9□□□□□ -1.14
CDH3-203ENST00000542274 IGHV4OR15-8A0A075B7B6 117 aa7.9□□□□□ -1.14
CDH3-203ENST00000542274 A0A087WW49 117 aa7.9□□□□□ -1.14
CDH3-203ENST00000542274 LEPROTO15243 131 aa7.9□□□□□ -1.14
CDH3-203ENST00000542274 ATP5EP2Q5VTU8 51 aa7.9□□□□□ -1.14
CDH3-203ENST00000542274 SYCNQ0VAF6 134 aa7.9□□□□□ -1.15
CDH3-203ENST00000542274 C9orf129Q5T035 196 aaKnown RBP7.9□□□□□ -1.15
CDH3-203ENST00000542274 OPRPNQ99935 248 aaPredicted RBP7.9□□□□□ -1.15
CDH3-203ENST00000542274 CNFNQ9BYD5 112 aa7.9□□□□□ -1.15
CDH3-203ENST00000542274 LRCOL1A6NCL2 159 aa7.89□□□□□ -1.15
CDH3-203ENST00000542274 LYRM9A8MSI8 78 aa7.89□□□□□ -1.15
CDH3-203ENST00000542274 GNRH2O43555 120 aa7.89□□□□□ -1.15
CDH3-203ENST00000542274 SPTSSBQ8NFR3 76 aa7.89□□□□□ -1.15
CDH3-203ENST00000542274 LITAFQ99732 161 aa7.89□□□□□ -1.15
CDH3-203ENST00000542274 DEFB104AQ8WTQ1 72 aa7.88□□□□□ -1.15
CDH3-203ENST00000542274 NSD1Q96L73 2696 aaPredicted RBP7.88□□□□□ -1.15
CDH3-203ENST00000542274 SPANXN1Q5VSR9 72 aa7.88□□□□□ -1.15
CDH3-203ENST00000542274 A0A0J9YX75 114 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 LY6G6DO95868 133 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 FN1P02751 2386 aaKnown RBP7.87□□□□□ -1.15
CDH3-203ENST00000542274 Q9H8V8 135 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 Q9HAA7 133 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 SLURP1P55000 103 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 TRAV22A0A0B4J277 110 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 TSHBP01222 138 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 C7orf65Q6ZTY9 151 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 DYNLRB2Q8TF09 96 aa7.87□□□□□ -1.15
CDH3-203ENST00000542274 MUC4Q99102 2169 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 TRAV10A0A0B4J240 114 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 A6NN06 94 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 LINC00269Q8N2A0 174 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 DIRC1Q969H9 104 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 FAM218AQ96MZ4 157 aa7.86□□□□□ -1.15
CDH3-203ENST00000542274 TRBV10-3A0A0K0K1G6 114 aa7.85□□□□□ -1.15
CDH3-203ENST00000542274 S100A4P26447 101 aaKnown RBP7.85□□□□□ -1.15
CDH3-203ENST00000542274 ZNF580Q9UK33 172 aa7.85□□□□□ -1.15
CDH3-203ENST00000542274 TRBV7-4A0A0J9YYF1 115 aa7.85□□□□□ -1.15
CDH3-203ENST00000542274 MIAQ16674 131 aa7.85□□□□□ -1.15
CDH3-203ENST00000542274 TRAV21A0A0B4J279 112 aa7.84□□□□□ -1.15
CDH3-203ENST00000542274 C16orf90A8MZG2 172 aa7.84□□□□□ -1.15
CDH3-203ENST00000542274 RNASE3P12724 160 aaKnown RBP7.84□□□□□ -1.15
CDH3-203ENST00000542274 Q6ZTC4 211 aa7.84□□□□□ -1.15
CDH3-203ENST00000542274 F8P00451 2351 aa7.84□□□□□ -1.15
CDH3-203ENST00000542274 CD28P10747 220 aa7.84□□□□□ -1.15
CDH3-203ENST00000542274 SUMO2P61956 95 aaKnown RBP7.84□□□□□ -1.15
CDH3-203ENST00000542274 PRM2P04554 102 aa7.83□□□□□ -1.16
CDH3-203ENST00000542274 PIK3CD-AS1Q5SR53 167 aa7.83□□□□□ -1.16
CDH3-203ENST00000542274 RPL39LQ96EH5 51 aaKnown RBP7.83□□□□□ -1.16
CDH3-203ENST00000542274 INAFM1C9JVW0 142 aa7.83□□□□□ -1.16
CDH3-203ENST00000542274 SPINK13Q1W4C9 94 aa7.83□□□□□ -1.16
CDH3-203ENST00000542274 NKAPP1Q8N9T2 125 aa7.83□□□□□ -1.16
CDH3-203ENST00000542274 JMJD1CQ15652 2540 aa7.82□□□□□ -1.16
CDH3-203ENST00000542274 C2CD3Q4AC94 2353 aa7.82□□□□□ -1.16
CDH3-203ENST00000542274 hDV103S1A0JD37 113 aa7.82□□□□□ -1.16
CDH3-203ENST00000542274 LENEPQ9Y5L5 61 aa7.82□□□□□ -1.16
CDH3-203ENST00000542274 MGPP08493 103 aa7.82□□□□□ -1.16
CDH3-203ENST00000542274 TEP1Q99973 2627 aaKnown RBP7.82□□□□□ -1.16
CDH3-203ENST00000542274 CYSRT1A8MQ03 144 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 TMEM254Q8TBM7 123 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 OBSCN-AS1Q96MR7 158 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 KLLNB2CW77 178 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 K7EQG2 157 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 LINC00313P59037 77 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 TMEM141Q96I45 108 aa7.81□□□□□ -1.16
CDH3-203ENST00000542274 ATP11AUNQ6ZP68 121 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 IGHV4-4A0A075B6R2 117 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 A0A0A0MQY5 61 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 NOTCH3Q9UM47 2321 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 HTN1P15515 57 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 UBE2AP49459 152 aa7.8□□□□□ -1.16
CDH3-203ENST00000542274 NCR3O14931 201 aa7.79□□□□□ -1.16
CDH3-203ENST00000542274 RNASE1P07998 156 aaKnown RBP7.79□□□□□ -1.16
CDH3-203ENST00000542274 LINC01006Q8NI28 216 aa7.79□□□□□ -1.16
CDH3-203ENST00000542274 DEFB131AP59861 70 aa7.78□□□□□ -1.16
CDH3-203ENST00000542274 FAM74A4Q5TZK3 123 aa7.78□□□□□ -1.16
CDH3-203ENST00000542274 ZNF625Q96I27 306 aaPredicted RBP7.78□□□□□ -1.16
CDH3-203ENST00000542274 PRYO14603 147 aa7.77□□□□□ -1.17
CDH3-203ENST00000542274 IGHV3-30-3P0DP02 117 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms