RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 A0A087WYN8 130 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 J3QKU1 62 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 LY6G6DO95868 133 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 LECT2O14960 151 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 CSNK1G2-AS1Q8NCQ2 148 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 EDA2RQ9HAV5 297 aa9.47□□□□□ -0.89
PTPN1-202ENST00000541713 C9orf129Q5T035 196 aaKnown RBP9.46□□□□□ -0.89
PTPN1-202ENST00000541713 TMEM86BQ8N661 226 aa9.46□□□□□ -0.89
PTPN1-202ENST00000541713 TENM3Q9P273 2699 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 IGLV5-45A0A087WSX0 123 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 COX7A2LO14548 114 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 CCDC179H3BU77 68 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 SMIM11BQ8TCY0 68 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 C14orf132Q9NPU4 83 aa9.46□□□□□ -0.9
PTPN1-202ENST00000541713 LINC00959A0A1B0GUT2 108 aa9.45□□□□□ -0.9
PTPN1-202ENST00000541713 TRBV6-4A0A1B0GX49 114 aa9.45□□□□□ -0.9
PTPN1-202ENST00000541713 MALP21145 153 aa9.45□□□□□ -0.9
PTPN1-202ENST00000541713 IL17DQ8TAD2 202 aa9.45□□□□□ -0.9
PTPN1-202ENST00000541713 IGKV2-28A0A075B6P5 120 aa9.44□□□□□ -0.9
PTPN1-202ENST00000541713 IGKV2D-28P01615 120 aa9.44□□□□□ -0.9
PTPN1-202ENST00000541713 FAM110AQ9BQ89 295 aa9.44□□□□□ -0.9
PTPN1-202ENST00000541713 SCGB1A1P11684 91 aa9.44□□□□□ -0.9
PTPN1-202ENST00000541713 NCR3O14931 201 aa9.43□□□□□ -0.9
PTPN1-202ENST00000541713 C6orf223Q8N319 242 aa9.43□□□□□ -0.9
PTPN1-202ENST00000541713 IGHV3OR16-9A0A0B4J2B5 98 aa9.43□□□□□ -0.9
PTPN1-202ENST00000541713 HILS1P60008 231 aa9.43□□□□□ -0.9
PTPN1-202ENST00000541713 CELA1Q9UNI1 258 aa9.43□□□□□ -0.9
PTPN1-202ENST00000541713 DAD1P61803 113 aa9.42□□□□□ -0.9
PTPN1-202ENST00000541713 NDUFV3P56181 108 aaKnown RBP9.42□□□□□ -0.9
PTPN1-202ENST00000541713 SS18Q15532 418 aa9.42□□□□□ -0.9
PTPN1-202ENST00000541713 IGKV3D-7A0A0C4DH55 119 aa9.41□□□□□ -0.9
PTPN1-202ENST00000541713 H3BT86 120 aa9.41□□□□□ -0.9
PTPN1-202ENST00000541713 TIMM17BO60830 172 aa9.41□□□□□ -0.9
PTPN1-202ENST00000541713 KLK12Q9UKR0 248 aa9.41□□□□□ -0.9
PTPN1-202ENST00000541713 RETNQ9HD89 108 aa9.4□□□□□ -0.9
PTPN1-202ENST00000541713 IGHV4-28A0A0C4DH34 117 aa9.4□□□□□ -0.91
PTPN1-202ENST00000541713 HERV-K104P63124 156 aa9.4□□□□□ -0.91
PTPN1-202ENST00000541713 CFAP161Q6P656 301 aa9.4□□□□□ -0.91
PTPN1-202ENST00000541713 CSDC2Q9Y534 153 aaKnown RBP9.39□□□□□ -0.91
PTPN1-202ENST00000541713 X6R8D5 127 aa9.39□□□□□ -0.91
PTPN1-202ENST00000541713 FAM236AA0A1B0GUQ0 79 aa9.39□□□□□ -0.91
PTPN1-202ENST00000541713 FAM236BA0A1B0GV22 79 aa9.39□□□□□ -0.91
PTPN1-202ENST00000541713 PRO0255Q9UI72 69 aa9.39□□□□□ -0.91
PTPN1-202ENST00000541713 NHLRC4P0CG21 123 aaPredicted RBP9.38□□□□□ -0.91
PTPN1-202ENST00000541713 SMCR5Q8TEV8 140 aa9.38□□□□□ -0.91
PTPN1-202ENST00000541713 CITED1Q99966 193 aa9.38□□□□□ -0.91
PTPN1-202ENST00000541713 TRAV13-2A0A0B4J235 113 aa9.38□□□□□ -0.91
PTPN1-202ENST00000541713 CHCHD10Q8WYQ3 142 aaPredicted RBP9.38□□□□□ -0.91
PTPN1-202ENST00000541713 OXLD1Q5BKU9 147 aa9.37□□□□□ -0.91
PTPN1-202ENST00000541713 SHISA2Q6UWI4 295 aa9.37□□□□□ -0.91
PTPN1-202ENST00000541713 XAGE1AQ9HD64 81 aa9.37□□□□□ -0.91
PTPN1-202ENST00000541713 SDIM1Q6ZPB5 146 aa9.37□□□□□ -0.91
PTPN1-202ENST00000541713 OVOL2Q9BRP0 275 aa9.37□□□□□ -0.91
PTPN1-202ENST00000541713 A0A087WZ39 114 aa9.36□□□□□ -0.91
PTPN1-202ENST00000541713 REG3AQ06141 175 aa9.36□□□□□ -0.91
PTPN1-202ENST00000541713 CMC4P56277 68 aaPredicted RBP9.36□□□□□ -0.91
PTPN1-202ENST00000541713 C10orf25Q5T742 122 aa9.36□□□□□ -0.91
PTPN1-202ENST00000541713 UNQ6190/PRO20217Q6UXQ8 127 aa9.36□□□□□ -0.91
PTPN1-202ENST00000541713 COPS9Q8WXC6 57 aa9.36□□□□□ -0.91
PTPN1-202ENST00000541713 PRB2P02812 416 aaPredicted RBP9.35□□□□□ -0.91
PTPN1-202ENST00000541713 WFDC9Q8NEX5 89 aa9.35□□□□□ -0.91
PTPN1-202ENST00000541713 HIGD2BQ4VC39 106 aa9.35□□□□□ -0.91
PTPN1-202ENST00000541713 S100A7L2Q5SY68 101 aa9.34□□□□□ -0.91
PTPN1-202ENST00000541713 C16orf95Q9H693 158 aa9.34□□□□□ -0.91
PTPN1-202ENST00000541713 A0A087WVE0 104 aa9.33□□□□□ -0.92
PTPN1-202ENST00000541713 RPL18AQ02543 176 aaKnown RBP9.32□□□□□ -0.92
PTPN1-202ENST00000541713 KMT2BQ9UMN6 2715 aaPredicted RBP9.32□□□□□ -0.92
PTPN1-202ENST00000541713 HIST1H4AP62805 103 aaKnown RBP9.31□□□□□ -0.92
PTPN1-202ENST00000541713 IBA57-AS1B1ANH7 110 aa9.3□□□□□ -0.92
PTPN1-202ENST00000541713 C6orf99Q4VX62 202 aa9.3□□□□□ -0.92
PTPN1-202ENST00000541713 Q8NDZ9 215 aa9.3□□□□□ -0.92
PTPN1-202ENST00000541713 C22orf24Q9Y442 160 aa9.3□□□□□ -0.92
PTPN1-202ENST00000541713 RPL28P46779 137 aaKnown RBP9.29□□□□□ -0.92
PTPN1-202ENST00000541713 IGHV4-30-4P0DP06 118 aa9.29□□□□□ -0.92
PTPN1-202ENST00000541713 TRACP01848 142 aa9.29□□□□□ -0.92
PTPN1-202ENST00000541713 CXCL5P42830 114 aa9.29□□□□□ -0.92
PTPN1-202ENST00000541713 SPAG11BQ08648 103 aa9.29□□□□□ -0.92
PTPN1-202ENST00000541713 C9orf66Q5T8R8 295 aa9.28□□□□□ -0.92
PTPN1-202ENST00000541713 KIR2DL5BQ8NHK3 375 aa9.27□□□□□ -0.93
PTPN1-202ENST00000541713 LINC00846Q9NV44 126 aa9.26□□□□□ -0.93
PTPN1-202ENST00000541713 CYSRT1A8MQ03 144 aa9.26□□□□□ -0.93
PTPN1-202ENST00000541713 SMIM20Q8N5G0 67 aa9.26□□□□□ -0.93
PTPN1-202ENST00000541713 KLK5Q9Y337 293 aaPredicted RBP9.26□□□□□ -0.93
PTPN1-202ENST00000541713 LAMTOR3Q9UHA4 124 aa9.25□□□□□ -0.93
PTPN1-202ENST00000541713 SPART-AS1P0CW21 52 aa9.25□□□□□ -0.93
PTPN1-202ENST00000541713 CD164L2Q6UWJ8 174 aa9.25□□□□□ -0.93
PTPN1-202ENST00000541713 FAM19A3Q7Z5A8 133 aa9.25□□□□□ -0.93
PTPN1-202ENST00000541713 WFDC10BQ8IUB3 73 aa9.25□□□□□ -0.93
PTPN1-202ENST00000541713 TENM2Q9NT68 2774 aa9.24□□□□□ -0.93
PTPN1-202ENST00000541713 APOC4P55056 127 aa9.24□□□□□ -0.93
PTPN1-202ENST00000541713 M0QXV9 152 aa9.24□□□□□ -0.93
PTPN1-202ENST00000541713 MRAPQ8TCY5 172 aa9.24□□□□□ -0.93
PTPN1-202ENST00000541713 ORMDL1Q9P0S3 153 aa9.24□□□□□ -0.93
PTPN1-202ENST00000541713 INAFM2P0DMQ5 153 aa9.23□□□□□ -0.93
PTPN1-202ENST00000541713 MRPL23Q16540 153 aaKnown RBP9.22□□□□□ -0.93
PTPN1-202ENST00000541713 Q8IZM0 81 aa9.22□□□□□ -0.93
PTPN1-202ENST00000541713 CSMD3Q7Z407 3707 aa9.22□□□□□ -0.93
PTPN1-202ENST00000541713 KIAA0087Q14695 138 aa9.22□□□□□ -0.93
PTPN1-202ENST00000541713 H0YGX0 51 aa9.21□□□□□ -0.93
PTPN1-202ENST00000541713 Q6ZTC4 211 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms