RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TINCRA0A1B0GVN0 87 aa8.8□□□□□ -1
USP28-209ENST00000540925 MT1HL1P0DM35 61 aa8.8□□□□□ -1
USP28-209ENST00000540925 CST9LQ9H4G1 147 aa8.8□□□□□ -1
USP28-209ENST00000540925 KRTAP7-1Q8IUC3 87 aa8.79□□□□□ -1
USP28-209ENST00000540925 SMIM1B2RUZ4 78 aa8.78□□□□□ -1
USP28-209ENST00000540925 NDUFC2-KCTD14E9PQ53 114 aa8.78□□□□□ -1
USP28-209ENST00000540925 SRSF9Q13242 221 aaKnown RBP eCLIP8.78□□□□□ -1
USP28-209ENST00000540925 GEMIN7Q9H840 131 aaKnown RBP8.78□□□□□ -1
USP28-209ENST00000540925 SMCO4Q9NRQ5 59 aa8.78□□□□□ -1
USP28-209ENST00000540925 FAM168BA1KXE4 195 aa8.77□□□□□ -1.01
USP28-209ENST00000540925 LINC00614P0C842 121 aa8.77□□□□□ -1.01
USP28-209ENST00000540925 PMVKQ15126 192 aa8.77□□□□□ -1.01
USP28-209ENST00000540925 PDZD11Q5EBL8 140 aa8.76□□□□□ -1.01
USP28-209ENST00000540925 LINC00469Q8N7U9 141 aa8.76□□□□□ -1.01
USP28-209ENST00000540925 C6orf226Q5I0X4 101 aa8.75□□□□□ -1.01
USP28-209ENST00000540925 C9orf129Q5T035 196 aaKnown RBP8.75□□□□□ -1.01
USP28-209ENST00000540925 PHF5AQ7RTV0 110 aaKnown RBP8.75□□□□□ -1.01
USP28-209ENST00000540925 PACRGQ96M98 296 aaPredicted RBP8.75□□□□□ -1.01
USP28-209ENST00000540925 TOMM7Q9P0U1 55 aa8.75□□□□□ -1.01
USP28-209ENST00000540925 HBDP02042 147 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 PRSS2P07478 247 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 IGLC3P0DOY3 106 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 GAGE2EQ4V326 116 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 SPINK6Q6UWN8 80 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 KRTAP11-1Q8IUC1 163 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 GAGE2DQ9UEU5 116 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 PSORS1C2Q9UIG4 136 aa8.74□□□□□ -1.01
USP28-209ENST00000540925 F8VRH5 84 aa8.73□□□□□ -1.01
USP28-209ENST00000540925 CKS1BP61024 79 aa8.73□□□□□ -1.01
USP28-209ENST00000540925 CBLN2Q8IUK8 224 aa8.73□□□□□ -1.01
USP28-209ENST00000540925 CXCL5P42830 114 aa8.72□□□□□ -1.01
USP28-209ENST00000540925 RAB5BP61020 215 aa8.72□□□□□ -1.01
USP28-209ENST00000540925 ODF1Q14990 250 aa8.72□□□□□ -1.01
USP28-209ENST00000540925 PMCHL1Q16048 86 aa8.72□□□□□ -1.01
USP28-209ENST00000540925 IGLV5-39A0A0G2JS06 123 aa8.71□□□□□ -1.02
USP28-209ENST00000540925 FAM19A5Q7Z5A7 132 aaPredicted RBP8.71□□□□□ -1.02
USP28-209ENST00000540925 SLC7A5P1Q8MH63 180 aa8.71□□□□□ -1.02
USP28-209ENST00000540925 COX7B2Q8TF08 81 aa8.71□□□□□ -1.02
USP28-209ENST00000540925 LINC01600Q96MT4 127 aa8.71□□□□□ -1.02
USP28-209ENST00000540925 SPINK8P0C7L1 97 aa8.7□□□□□ -1.02
USP28-209ENST00000540925 ATP5LO75964 103 aa8.69□□□□□ -1.02
USP28-209ENST00000540925 ZNF22P17026 224 aaPredicted RBP8.69□□□□□ -1.02
USP28-209ENST00000540925 CHCHD1Q96BP2 118 aaKnown RBP8.69□□□□□ -1.02
USP28-209ENST00000540925 M0QXV9 152 aa8.68□□□□□ -1.02
USP28-209ENST00000540925 SERTAD4-AS1Q5TG53 156 aa8.68□□□□□ -1.02
USP28-209ENST00000540925 H3BRM9 83 aa8.67□□□□□ -1.02
USP28-209ENST00000540925 XAGE1AQ9HD64 81 aa8.67□□□□□ -1.02
USP28-209ENST00000540925 C11orf86A6NJI1 115 aa8.66□□□□□ -1.02
USP28-209ENST00000540925 IGLV7-43P04211 117 aa8.66□□□□□ -1.02
USP28-209ENST00000540925 KRTAP10-8P60410 259 aa8.66□□□□□ -1.02
USP28-209ENST00000540925 C1orf137Q5JT78 98 aa8.66□□□□□ -1.02
USP28-209ENST00000540925 NDUFA6P56556 154 aa8.65□□□□□ -1.02
USP28-209ENST00000540925 LINC00310P59036 64 aa8.65□□□□□ -1.02
USP28-209ENST00000540925 REG3GQ6UW15 175 aa8.65□□□□□ -1.02
USP28-209ENST00000540925 BAGE3Q86Y29 109 aa8.65□□□□□ -1.02
USP28-209ENST00000540925 RNF213Q63HN8 5207 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 TRAV12-1A0A0B4J245 112 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 COLCA2A8K830 154 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 TRGC2P03986 189 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 TP73-AS1Q9UF72 201 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 PLA2G2DQ9UNK4 145 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 C22orf24Q9Y442 160 aa8.64□□□□□ -1.03
USP28-209ENST00000540925 IFI27L1Q96BM0 104 aa8.63□□□□□ -1.03
USP28-209ENST00000540925 CHTOPQ9Y3Y2 248 aaKnown RBP8.62□□□□□ -1.03
USP28-209ENST00000540925 IGLV5-37A0A075B6J1 123 aa8.61□□□□□ -1.03
USP28-209ENST00000540925 FAM19A2Q8N3H0 131 aa8.61□□□□□ -1.03
USP28-209ENST00000540925 ZNF625Q96I27 306 aaPredicted RBP8.61□□□□□ -1.03
USP28-209ENST00000540925 UBE2BP63146 152 aa8.6□□□□□ -1.03
USP28-209ENST00000540925 TMEM223A0PJW6 202 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 H0Y9J4 135 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 HSBP1O75506 76 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 SERF1AO75920 110 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 LBHQ53QV2 105 aaPredicted RBP8.59□□□□□ -1.03
USP28-209ENST00000540925 TMEM170BQ5T4T1 132 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 MRPL55Q7Z7F7 128 aaKnown RBP8.59□□□□□ -1.03
USP28-209ENST00000540925 DIRC1Q969H9 104 aa8.59□□□□□ -1.03
USP28-209ENST00000540925 LRP2P98164 4655 aa8.58□□□□□ -1.04
USP28-209ENST00000540925 NUPR1O60356 82 aa8.57□□□□□ -1.04
USP28-209ENST00000540925 KRTAP1-4P0C5Y4 121 aa8.57□□□□□ -1.04
USP28-209ENST00000540925 COX17Q14061 63 aa8.57□□□□□ -1.04
USP28-209ENST00000540925 SFTA2Q6UW10 78 aa8.57□□□□□ -1.04
USP28-209ENST00000540925 ERG28Q9UKR5 140 aa8.57□□□□□ -1.04
USP28-209ENST00000540925 PFN2P35080 140 aa8.56□□□□□ -1.04
USP28-209ENST00000540925 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
USP28-209ENST00000540925 SND1-IT1Q9HBX3 110 aa8.56□□□□□ -1.04
USP28-209ENST00000540925 ZNF861PO60384 105 aa8.54□□□□□ -1.04
USP28-209ENST00000540925 LEPROTL1O95214 131 aa8.54□□□□□ -1.04
USP28-209ENST00000540925 VPREB1P12018 145 aa8.54□□□□□ -1.04
USP28-209ENST00000540925 Q8NDZ9 215 aa8.54□□□□□ -1.04
USP28-209ENST00000540925 BCE1O60756 84 aa8.53□□□□□ -1.04
USP28-209ENST00000540925 RPL37AP8A6NKH3 93 aa8.52□□□□□ -1.05
USP28-209ENST00000540925 SCO1O75880 301 aa8.52□□□□□ -1.05
USP28-209ENST00000540925 KRTAP13-1Q8IUC0 172 aa8.51□□□□□ -1.05
USP28-209ENST00000540925 PRR26Q8N8Z3 221 aa8.51□□□□□ -1.05
USP28-209ENST00000540925 GAGE10A6NGK3 116 aa8.5□□□□□ -1.05
USP28-209ENST00000540925 NKAPP1Q8N9T2 125 aa8.5□□□□□ -1.05
USP28-209ENST00000540925 HSPB8Q9UJY1 196 aa8.5□□□□□ -1.05
USP28-209ENST00000540925 IGLV1-50A0A075B6I6 118 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BKO60814 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BJP06899 126 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms