RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 IFITM5A6NNB3 132 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 BBIP1A8MTZ0 92 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 IBA57-AS1B1ANH7 110 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 F6UZH7 168 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 M0R2P5 195 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 CORTO00230 105 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 ZNF737O75373 536 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 IGLV1-51P01701 117 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 PYYP10082 97 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 MGST1P10620 155 aaKnown RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 HIST1H1DP16402 221 aaKnown RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 SNRPD3P62318 126 aaKnown RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 CDK6Q00534 326 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 CIRBPQ14011 172 aaKnown RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 ELOBQ15370 118 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 OCIAD2Q56VL3 154 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 ARPINQ7Z6K5 226 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 UBE2DNLQ8IWF7 75 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 Q8IYB0 196 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 OR5AS1Q8N127 324 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 TCTEX1D1Q8N7M0 179 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 Q8N814 137 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 OR2T35Q8NGX2 323 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 ZNF431Q8TF32 576 aaPredicted RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 CLEC2BQ92478 149 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 RAB37Q96AX2 223 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 ZC2HC1AQ96GY0 325 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 Q96M85 177 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 SDF2Q99470 211 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 PSMG3Q9BT73 122 aaPredicted RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 COMMD3Q9UBI1 195 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 DNAJC15Q9Y5T4 150 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 USH2AO75445 5202 aa0.99□□□□□ -2.25
CD44-233ENST00000531141 MACF1Q9UPN3 7388 aaKnown RBP0.99□□□□□ -2.25
CD44-233ENST00000531141 TRAV2A0A0B4J234 112 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 TRAV12-1A0A0B4J245 112 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 TRAV1-1A0A0B4J248 108 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 FAM236AA0A1B0GUQ0 79 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 FAM236BA0A1B0GV22 79 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 C20orf202A1L168 122 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 HYPMO75409 117 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 CRPP02741 224 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 ASAH2BP0C7U1 165 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 MT1HL1P0DM35 61 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 SLC25A4P12235 298 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 CKS2P33552 79 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 GNG4P50150 75 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 PCBD1P61457 104 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 HAMPP81172 84 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 PDE6HQ13956 83 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 LINC00311Q8N616 119 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 SFT2D1Q8WV19 159 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 PP6455Q8WZ26 134 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 CST11Q9H112 138 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 CST9LQ9H4G1 147 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 NIT2Q9NQR4 276 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 DNAH8Q96JB1 4490 aa0.98□□□□□ -2.25
CD44-233ENST00000531141 KMT2DO14686 5537 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 TRAV12-2A0A075B6T6 113 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 IGKV2D-26A0A0A0MRZ7 120 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 TRAV10A0A0B4J240 114 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 TRAV3A0A0B4J244 114 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 NBDYA0A0U1RRE5 68 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 M0R1W7 72 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 ERC2-IT1O76042 136 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 GYPAP02724 150 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 CD3DP04234 171 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 AKAIN1P0CW23 69 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 RBP2P50120 134 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 ZNF846Q147U1 533 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 MEIG1Q5JSS6 88 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 CLLU1Q5K131 121 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 SLC48A1Q6P1K1 146 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 UNQ6190/PRO20217Q6UXQ8 127 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 ATP11AUNQ6ZP68 121 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 C8orf59Q8N0T1 100 aaPredicted RBP0.97□□□□□ -2.25
CD44-233ENST00000531141 LINC00269Q8N2A0 174 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 KCNRGQ8N5I3 272 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 C9orf163Q8N9P6 203 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 OR10AG1Q8NH19 301 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 ATP6V0E2Q8NHE4 81 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 OTOSQ8NHW6 89 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 C14orf144Q96I85 54 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 CIB3Q96Q77 187 aaPredicted RBP0.97□□□□□ -2.25
CD44-233ENST00000531141 NAA60Q9H7X0 242 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 KAAG1Q9UBP8 84 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 HILPDAQ9Y5L2 63 aa0.97□□□□□ -2.25
CD44-233ENST00000531141 DEFB131BA0A096LNP1 70 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 IGHV1-24A0A0C4DH33 117 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 TRBV6-5A0A0K0K1A5 114 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 ZNF736B4DX44 427 aaPredicted RBP0.96□□□□□ -2.26
CD44-233ENST00000531141 SNAPC5O75971 98 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 CD14P08571 375 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 BRS3P32247 399 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 PPP3R1P63098 170 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 Q1T7F1 81 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 DEFB135Q30KP9 77 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 KRTAP26-1Q6PEX3 210 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms