RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 VPREB3Q9UKI3 123 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 CSDC2Q9Y534 153 aaKnown RBP3.43□□□□□ -1.86
CD44-230ENST00000528922 TRAV4A0A0B4J268 109 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-53P01767 116 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 INAFM2P0DMQ5 153 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-30-3P0DP02 117 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 DAZ2Q13117 558 aaKnown RBP3.42□□□□□ -1.86
CD44-230ENST00000528922 MIAQ16674 131 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 C2orf82Q6UX34 121 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 BRD3OSQ6XYD6 125 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 FAM19A3Q7Z5A8 133 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 DAZ4Q86SG3 579 aaKnown RBP3.42□□□□□ -1.86
CD44-230ENST00000528922 MUSTN1Q8IVN3 82 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 ZNRF2Q8NHG8 242 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 TMEM263Q8WUH6 116 aaKnown RBP3.42□□□□□ -1.86
CD44-230ENST00000528922 VSIG2Q96IQ7 327 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 SMR3AQ99954 134 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 CITED1Q99966 193 aa3.42□□□□□ -1.86
CD44-230ENST00000528922 DAZ3Q9NR90 486 aaKnown RBP3.42□□□□□ -1.86
CD44-230ENST00000528922 CUBNO60494 3623 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 ACANP16112 2415 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 NBEAL2Q6ZNJ1 2754 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 TRAV13-2A0A0B4J235 113 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 F6UB75 175 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 NDUFA1O15239 70 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 RPL39P62891 51 aaKnown RBP3.41□□□□□ -1.86
CD44-230ENST00000528922 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 KRTAP5-1Q6L8H4 278 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 LRRC75A-AS1Q8N1F1 130 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 DYNLRB2Q8TF09 96 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 TMEM101Q96IK0 257 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 LINC00527Q9UJ94 153 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 ICOSQ9Y6W8 199 aa3.41□□□□□ -1.86
CD44-230ENST00000528922 TGP01266 2768 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 NACAE9PAV3 2078 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 IGKV3-7A0A075B6H7 116 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 A0A0J9YXV3 536 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 RS1O15537 224 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 TRBV12-3P01733 135 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 TRACP01848 142 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 BLCAPP62952 87 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 SPINK13Q1W4C9 94 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 DEFB121Q5J5C9 76 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 FAM222AQ5U5X8 452 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 C4orf3Q8WVX3 66 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 LINC01587Q99440 93 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 TLN2Q9Y4G6 2542 aa3.4□□□□□ -1.87
CD44-230ENST00000528922 H0YGX0 51 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 H3BQ85 93 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 LST1O00453 97 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 UBE2L6O14933 153 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 SYNJ2BPP57105 145 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 TMEM61Q8N0U2 210 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 Q8N2B8 174 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 TMEM126AQ9H061 195 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 UBE2D4Q9Y2X8 147 aa3.39□□□□□ -1.87
CD44-230ENST00000528922 AKAP6Q13023 2319 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 DCHS2Q6V1P9 2916 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 RBMY1BA6NDE4 496 aaKnown RBP3.38□□□□□ -1.87
CD44-230ENST00000528922 RBMY1EA6NEQ0 496 aaKnown RBP3.38□□□□□ -1.87
CD44-230ENST00000528922 COX7A2LO14548 114 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 LY6G6DO95868 133 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 DNAL4O96015 105 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 TGFAP01135 160 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 RBMY1DP0C7P1 496 aaKnown RBP3.38□□□□□ -1.87
CD44-230ENST00000528922 RBMY1A1P0DJD3 496 aaKnown RBP3.38□□□□□ -1.87
CD44-230ENST00000528922 RBMY1CP0DJD4 496 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 PRB4P10163 310 aaPredicted RBP3.38□□□□□ -1.87
CD44-230ENST00000528922 CXCL5P42830 114 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 EMP1P54849 157 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 DEFB131AP59861 70 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 DEFB112Q30KQ8 113 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 MEIG1Q5JSS6 88 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 S100A7L2Q5SY68 101 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 C15orf53Q8NAA6 179 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 MUC7Q8TAX7 377 aa3.38□□□□□ -1.87
CD44-230ENST00000528922 TACC2O95359 2948 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 TRAV12-2A0A075B6T6 113 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 A0A1B0GX51 115 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 H7C2G1 150 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 MT-ATP8P03928 68 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 INSL3P51460 131 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 TSPEAR-AS2P59090 65 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 Q6ZQT7 251 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 LINC00643Q86TS7 51 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 LINC01561Q8N1V8 128 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 DAND5Q8N907 189 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 C16orf74Q96GX8 76 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 CHCHD7Q9BUK0 85 aa3.37□□□□□ -1.87
CD44-230ENST00000528922 NSD1Q96L73 2696 aaPredicted RBP3.36□□□□□ -1.87
CD44-230ENST00000528922 TRBV7-7A0A0K0K1E9 115 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 TRBV6-4A0A1B0GX49 114 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 CRPP02741 224 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 KRTAP5-9P26371 169 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 C9orf129Q5T035 196 aaKnown RBP3.36□□□□□ -1.87
CD44-230ENST00000528922 LINC00308Q8TCZ7 52 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 TMEM243Q9BU79 118 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 ZNF702PQ9H963 129 aa3.36□□□□□ -1.87
CD44-230ENST00000528922 ZNF469Q96JG9 3925 aaPredicted RBP3.35□□□□□ -1.87
CD44-230ENST00000528922 MXRA5Q9NR99 2828 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms