RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 ZNF815PA8K554 130 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 EPM2AB3EWF7 344 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 J3QQQ9 107 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 ANGP03950 147 aaKnown RBP8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 HERVK_113P63121 156 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 WFDC2Q14508 124 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 C1orf43Q9BWL3 253 aa8.73□□□□□ -1.01
PDLIM3-210ENST00000514308 H3BRM9 83 aa8.72□□□□□ -1.01
PDLIM3-210ENST00000514308 LGALS3P17931 250 aaKnown RBP8.72□□□□□ -1.01
PDLIM3-210ENST00000514308 GEMIN7Q9H840 131 aaKnown RBP8.72□□□□□ -1.01
PDLIM3-210ENST00000514308 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.71□□□□□ -1.02
PDLIM3-210ENST00000514308 IGHV1-58A0A0C4DH39 117 aa8.71□□□□□ -1.02
PDLIM3-210ENST00000514308 MIAQ16674 131 aa8.71□□□□□ -1.02
PDLIM3-210ENST00000514308 ENHOQ6UWT2 76 aa8.71□□□□□ -1.02
PDLIM3-210ENST00000514308 CEND1Q8N111 149 aa8.71□□□□□ -1.02
PDLIM3-210ENST00000514308 ABCA13Q86UQ4 5058 aa8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 RBX1P62877 108 aa8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 GAGE6Q13070 117 aa8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 RNASE13Q5GAN3 156 aaKnown RBP8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 LINC00242Q5T6M2 205 aa8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 SPANXB1Q9NS25 103 aaPredicted RBP8.7□□□□□ -1.02
PDLIM3-210ENST00000514308 A0A1B0GUV1 79 aa8.69□□□□□ -1.02
PDLIM3-210ENST00000514308 TAX1BP3O14907 124 aa8.69□□□□□ -1.02
PDLIM3-210ENST00000514308 SCGB1D4Q6XE38 83 aa8.69□□□□□ -1.02
PDLIM3-210ENST00000514308 LINC00469Q8N7U9 141 aa8.69□□□□□ -1.02
PDLIM3-210ENST00000514308 HIST1H4GQ99525 98 aa8.69□□□□□ -1.02
PDLIM3-210ENST00000514308 TSPEAR-AS2P59090 65 aa8.68□□□□□ -1.02
PDLIM3-210ENST00000514308 C14orf177Q52M58 125 aa8.68□□□□□ -1.02
PDLIM3-210ENST00000514308 LINC00269Q8N2A0 174 aa8.68□□□□□ -1.02
PDLIM3-210ENST00000514308 PRR34Q9NV39 138 aa8.68□□□□□ -1.02
PDLIM3-210ENST00000514308 SMIM13P0DJ93 91 aa8.67□□□□□ -1.02
PDLIM3-210ENST00000514308 Q5VSD8 79 aa8.67□□□□□ -1.02
PDLIM3-210ENST00000514308 CDKN2A-AS1Q9UH64 79 aa8.67□□□□□ -1.02
PDLIM3-210ENST00000514308 IGLV5-39A0A0G2JS06 123 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 CCL25O15444 150 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 SMR3BP02814 79 aaPredicted RBP8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 PTTG1IPP53801 180 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 FXYD2P54710 66 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 HAMPP81172 84 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 COX6A2Q02221 97 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 CLPSL2Q6UWE3 100 aa8.66□□□□□ -1.02
PDLIM3-210ENST00000514308 TRAV13-1A0A0B4J241 112 aa8.65□□□□□ -1.02
PDLIM3-210ENST00000514308 FAM229AH3BQW9 127 aa8.65□□□□□ -1.02
PDLIM3-210ENST00000514308 REG3AQ06141 175 aa8.65□□□□□ -1.02
PDLIM3-210ENST00000514308 SRSF9Q13242 221 aaKnown RBP eCLIP8.65□□□□□ -1.02
PDLIM3-210ENST00000514308 FAM30AQ9NZY2 134 aa8.65□□□□□ -1.02
PDLIM3-210ENST00000514308 IGLV4-60A0A075B6I1 120 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 TMEM238LA0A1B0GVL6 79 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 C9orf118A6NHY6 69 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 A6NJY4 79 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 USP17L23D6RBM5 183 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 SPINK8P0C7L1 97 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 Q6ZSA8 131 aa8.64□□□□□ -1.03
PDLIM3-210ENST00000514308 IGHV3-64A0A075B6Q5 118 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 TRAV8-4A0A0B4J246 113 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 A0A1B0GWB2 263 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 TMEM238C9JI98 176 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 LINC01620Q4KN68 170 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 Q6ZVH6 145 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 NDUFA12Q9UI09 145 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 FAT1Q14517 4588 aa8.63□□□□□ -1.03
PDLIM3-210ENST00000514308 IGLV10-54A0A075B6I4 117 aa8.62□□□□□ -1.03
PDLIM3-210ENST00000514308 A0A0J9YXY3 114 aa8.62□□□□□ -1.03
PDLIM3-210ENST00000514308 TIMM17BO60830 172 aa8.62□□□□□ -1.03
PDLIM3-210ENST00000514308 INAFM2P0DMQ5 153 aa8.62□□□□□ -1.03
PDLIM3-210ENST00000514308 LINC01561Q8N1V8 128 aa8.62□□□□□ -1.03
PDLIM3-210ENST00000514308 LINC00959A0A1B0GUT2 108 aa8.61□□□□□ -1.03
PDLIM3-210ENST00000514308 SMIM1B2RUZ4 78 aa8.61□□□□□ -1.03
PDLIM3-210ENST00000514308 NDUFA1O15239 70 aa8.61□□□□□ -1.03
PDLIM3-210ENST00000514308 NHP2Q9NX24 153 aaKnown RBP8.61□□□□□ -1.03
PDLIM3-210ENST00000514308 UBE2V1Q13404 147 aa8.6□□□□□ -1.03
PDLIM3-210ENST00000514308 SS18Q15532 418 aa8.6□□□□□ -1.03
PDLIM3-210ENST00000514308 KRTAP26-1Q6PEX3 210 aa8.6□□□□□ -1.03
PDLIM3-210ENST00000514308 IGHV3OR16-9A0A0B4J2B5 98 aa8.59□□□□□ -1.03
PDLIM3-210ENST00000514308 VAMP3Q15836 100 aa8.59□□□□□ -1.03
PDLIM3-210ENST00000514308 SPANXDQ9BXN6 97 aa8.59□□□□□ -1.03
PDLIM3-210ENST00000514308 SPANXCQ9NY87 97 aa8.59□□□□□ -1.03
PDLIM3-210ENST00000514308 A0A087WZ39 114 aa8.58□□□□□ -1.04
PDLIM3-210ENST00000514308 HERV-K104P63124 156 aa8.58□□□□□ -1.04
PDLIM3-210ENST00000514308 CIRBPQ14011 172 aaKnown RBP8.58□□□□□ -1.04
PDLIM3-210ENST00000514308 SCXQ7RTU7 201 aa8.58□□□□□ -1.04
PDLIM3-210ENST00000514308 LITAFQ99732 161 aa8.58□□□□□ -1.04
PDLIM3-210ENST00000514308 PLA2G1BP04054 148 aaKnown RBP8.57□□□□□ -1.04
PDLIM3-210ENST00000514308 IFITM1P13164 125 aa8.57□□□□□ -1.04
PDLIM3-210ENST00000514308 RPL24P83731 157 aaKnown RBP8.57□□□□□ -1.04
PDLIM3-210ENST00000514308 LINC00528Q8N1L1 170 aa8.57□□□□□ -1.04
PDLIM3-210ENST00000514308 RAB37Q96AX2 223 aa8.57□□□□□ -1.04
PDLIM3-210ENST00000514308 IGKV3OR2-268A0A0C4DH90 116 aa8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 H3BUT2 72 aa8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 LCE2AQ5TA79 106 aaPredicted RBP8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 SFTA2Q6UW10 78 aa8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 MUSTN1Q8IVN3 82 aa8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 ZNF625Q96I27 306 aaPredicted RBP8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 PPDPFQ9H3Y8 114 aa8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 SRRM2Q9UQ35 2752 aaKnown RBP8.56□□□□□ -1.04
PDLIM3-210ENST00000514308 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.55□□□□□ -1.04
PDLIM3-210ENST00000514308 A0A1W2PPM0 123 aa8.55□□□□□ -1.04
PDLIM3-210ENST00000514308 GTF2H5Q6ZYL4 71 aa8.55□□□□□ -1.04
PDLIM3-210ENST00000514308 C9orf163Q8N9P6 203 aa8.55□□□□□ -1.04
PDLIM3-210ENST00000514308 COX7B2Q8TF08 81 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms