RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 GAGE2BQ13066 116 aa6.04□□□□□ -1.44
RNF4-221ENST00000513643 C2orf82Q6UX34 121 aa6.04□□□□□ -1.44
RNF4-221ENST00000513643 KRTAP7-1Q8IUC3 87 aa6.04□□□□□ -1.44
RNF4-221ENST00000513643 Q8IZM0 81 aa6.04□□□□□ -1.44
RNF4-221ENST00000513643 SMIM1B2RUZ4 78 aa6.03□□□□□ -1.44
RNF4-221ENST00000513643 PRR3P79522 188 aaKnown RBP6.03□□□□□ -1.44
RNF4-221ENST00000513643 ODF1Q14990 250 aa6.03□□□□□ -1.44
RNF4-221ENST00000513643 PMVKQ15126 192 aa6.03□□□□□ -1.44
RNF4-221ENST00000513643 CBLN2Q8IUK8 224 aa6.03□□□□□ -1.44
RNF4-221ENST00000513643 SMCO4Q9NRQ5 59 aa6.03□□□□□ -1.44
RNF4-221ENST00000513643 HBDP02042 147 aa6.02□□□□□ -1.45
RNF4-221ENST00000513643 IGLC3P0DOY3 106 aa6.02□□□□□ -1.45
RNF4-221ENST00000513643 SRSF9Q13242 221 aaKnown RBP eCLIP6.02□□□□□ -1.45
RNF4-221ENST00000513643 C9orf116Q5BN46 136 aaPredicted RBP6.02□□□□□ -1.45
RNF4-221ENST00000513643 C7orf33Q8WU49 177 aa6.02□□□□□ -1.45
RNF4-221ENST00000513643 NDUFC2-KCTD14E9PQ53 114 aa6.01□□□□□ -1.45
RNF4-221ENST00000513643 RAB5BP61020 215 aa6.01□□□□□ -1.45
RNF4-221ENST00000513643 GEMIN7Q9H840 131 aaKnown RBP6.01□□□□□ -1.45
RNF4-221ENST00000513643 IGLV5-39A0A0G2JS06 123 aa6□□□□□ -1.45
RNF4-221ENST00000513643 COLCA2A8K830 154 aa6□□□□□ -1.45
RNF4-221ENST00000513643 MT1HL1P0DM35 61 aa6□□□□□ -1.45
RNF4-221ENST00000513643 RPL18AQ02543 176 aaKnown RBP6□□□□□ -1.45
RNF4-221ENST00000513643 PMCHL1Q16048 86 aa6□□□□□ -1.45
RNF4-221ENST00000513643 C4orf48Q5BLP8 95 aa6□□□□□ -1.45
RNF4-221ENST00000513643 C6orf226Q5I0X4 101 aa6□□□□□ -1.45
RNF4-221ENST00000513643 C9orf129Q5T035 196 aaKnown RBP6□□□□□ -1.45
RNF4-221ENST00000513643 LINC00469Q8N7U9 141 aa6□□□□□ -1.45
RNF4-221ENST00000513643 CHCHD1Q96BP2 118 aaKnown RBP6□□□□□ -1.45
RNF4-221ENST00000513643 FAM168BA1KXE4 195 aa5.99□□□□□ -1.45
RNF4-221ENST00000513643 F8VRH5 84 aa5.99□□□□□ -1.45
RNF4-221ENST00000513643 CXCL5P42830 114 aa5.99□□□□□ -1.45
RNF4-221ENST00000513643 KRTAP11-1Q8IUC1 163 aa5.99□□□□□ -1.45
RNF4-221ENST00000513643 ATP5LO75964 103 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 TRGC2P03986 189 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 PRSS2P07478 247 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 ZNF22P17026 224 aaPredicted RBP5.98□□□□□ -1.45
RNF4-221ENST00000513643 LINC00310P59036 64 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 CKS1BP61024 79 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 PHF5AQ7RTV0 110 aaKnown RBP5.98□□□□□ -1.45
RNF4-221ENST00000513643 PACRGQ96M98 296 aaPredicted RBP5.98□□□□□ -1.45
RNF4-221ENST00000513643 TOMM7Q9P0U1 55 aa5.98□□□□□ -1.45
RNF4-221ENST00000513643 J3QL48 77 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 GAGE2EQ4V326 116 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 SPINK6Q6UWN8 80 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 COX7B2Q8TF08 81 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 GAGE2DQ9UEU5 116 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 PSORS1C2Q9UIG4 136 aa5.97□□□□□ -1.45
RNF4-221ENST00000513643 TRAV12-1A0A0B4J245 112 aa5.96□□□□□ -1.46
RNF4-221ENST00000513643 C11orf86A6NJI1 115 aa5.96□□□□□ -1.46
RNF4-221ENST00000513643 SPINK8P0C7L1 97 aa5.96□□□□□ -1.46
RNF4-221ENST00000513643 BAGE3Q86Y29 109 aa5.96□□□□□ -1.46
RNF4-221ENST00000513643 H3BRM9 83 aa5.95□□□□□ -1.46
RNF4-221ENST00000513643 LINC01600Q96MT4 127 aa5.95□□□□□ -1.46
RNF4-221ENST00000513643 NUPR1O60356 82 aa5.94□□□□□ -1.46
RNF4-221ENST00000513643 SERTAD4-AS1Q5TG53 156 aa5.94□□□□□ -1.46
RNF4-221ENST00000513643 IFI27L1Q96BM0 104 aa5.94□□□□□ -1.46
RNF4-221ENST00000513643 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
RNF4-221ENST00000513643 A6NJY4 79 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 SERF1AO75920 110 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 NDUFA6P56556 154 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 KRTAP10-8P60410 259 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 FAM19A5Q7Z5A7 132 aaPredicted RBP5.93□□□□□ -1.46
RNF4-221ENST00000513643 FAM19A2Q8N3H0 131 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 ZNF625Q96I27 306 aaPredicted RBP5.93□□□□□ -1.46
RNF4-221ENST00000513643 XAGE1AQ9HD64 81 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 TP73-AS1Q9UF72 201 aa5.93□□□□□ -1.46
RNF4-221ENST00000513643 CHTOPQ9Y3Y2 248 aaKnown RBP5.93□□□□□ -1.46
RNF4-221ENST00000513643 IGLV5-37A0A075B6J1 123 aa5.92□□□□□ -1.46
RNF4-221ENST00000513643 TMEM223A0PJW6 202 aa5.92□□□□□ -1.46
RNF4-221ENST00000513643 M0QXV9 152 aa5.92□□□□□ -1.46
RNF4-221ENST00000513643 C22orf24Q9Y442 160 aa5.92□□□□□ -1.46
RNF4-221ENST00000513643 UBR4Q5T4S7 5183 aa5.91□□□□□ -1.46
RNF4-221ENST00000513643 HSBP1O75506 76 aa5.91□□□□□ -1.46
RNF4-221ENST00000513643 IGLV7-43P04211 117 aa5.91□□□□□ -1.46
RNF4-221ENST00000513643 C21orf62-AS1Q17RA5 79 aa5.91□□□□□ -1.46
RNF4-221ENST00000513643 SCO1O75880 301 aa5.9□□□□□ -1.46
RNF4-221ENST00000513643 COX17Q14061 63 aa5.9□□□□□ -1.46
RNF4-221ENST00000513643 C1orf137Q5JT78 98 aa5.9□□□□□ -1.46
RNF4-221ENST00000513643 TMEM170BQ5T4T1 132 aa5.9□□□□□ -1.46
RNF4-221ENST00000513643 LEPROTL1O95214 131 aa5.89□□□□□ -1.47
RNF4-221ENST00000513643 LBHQ53QV2 105 aaPredicted RBP5.89□□□□□ -1.47
RNF4-221ENST00000513643 SFTA2Q6UW10 78 aa5.89□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BKO60814 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BJP06899 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BOP23527 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BBP33778 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BDP58876 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BCP62807 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST2H2BEQ16778 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.88□□□□□ -1.47
RNF4-221ENST00000513643 REG3GQ6UW15 175 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 MRPL55Q7Z7F7 128 aaKnown RBP5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BHQ93079 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BNQ99877 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 HIST1H2BMQ99879 126 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 ERG28Q9UKR5 140 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 LRP2P98164 4655 aa5.88□□□□□ -1.47
RNF4-221ENST00000513643 KRTAP1-4P0C5Y4 121 aa5.87□□□□□ -1.47
RNF4-221ENST00000513643 Q8NDZ9 215 aa5.87□□□□□ -1.47
RNF4-221ENST00000513643 LINC00167Q96N53 147 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms