RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CHCHD10Q8WYQ3 142 aaPredicted RBP6.43□□□□□ -1.38
LIMCH1-218ENST00000513024 RPL28P46779 137 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 RETNLBQ9BQ08 111 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 HCG22E2RYF7 251 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 H0Y9P7 68 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 GAS8-AS1O95177 125 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 SPINK6Q6UWN8 80 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 CEP192Q8TEP8 1941 aa6.42□□□□□ -1.38
LIMCH1-218ENST00000513024 PRRC2AP48634 2157 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 IGKV2-24A0A0C4DH68 120 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 EDN2P20800 178 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 PROK1P58294 105 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 ODF3Q96PU9 254 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 CFAP54Q96N23 3096 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 M0QY20 66 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 M0R378 163 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 MAP6D1Q9H9H5 199 aa6.41□□□□□ -1.38
LIMCH1-218ENST00000513024 IGLV2-11P01706 119 aa6.4□□□□□ -1.38
LIMCH1-218ENST00000513024 Q8N814 137 aa6.4□□□□□ -1.38
LIMCH1-218ENST00000513024 KIAA1549Q9HCM3 1950 aa6.4□□□□□ -1.38
LIMCH1-218ENST00000513024 HCFC1P51610 2035 aa6.4□□□□□ -1.39
LIMCH1-218ENST00000513024 A0A1B0GU69 56 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 LINC00574Q9H8X3 128 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 ZNF706Q9Y5V0 76 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 JMJD1CQ15652 2540 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 FSTL3O95633 263 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 LMO4P61968 165 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 ATP11AUNQ6ZP68 121 aa6.39□□□□□ -1.39
LIMCH1-218ENST00000513024 MUC7Q8TAX7 377 aa6.38□□□□□ -1.39
LIMCH1-218ENST00000513024 Q6ZSV7 163 aa6.38□□□□□ -1.39
LIMCH1-218ENST00000513024 A0A1W2PNU3 283 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-218ENST00000513024 K7EQG2 157 aa6.38□□□□□ -1.39
LIMCH1-218ENST00000513024 C11orf21Q9P2W6 132 aa6.38□□□□□ -1.39
LIMCH1-218ENST00000513024 C1orf137Q5JT78 98 aa6.37□□□□□ -1.39
LIMCH1-218ENST00000513024 IGKV2-28A0A075B6P5 120 aa6.37□□□□□ -1.39
LIMCH1-218ENST00000513024 IGKV2D-28P01615 120 aa6.37□□□□□ -1.39
LIMCH1-218ENST00000513024 LINC00575Q6W349 94 aa6.37□□□□□ -1.39
LIMCH1-218ENST00000513024 TRBV6-4A0A1B0GX49 114 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 POLR2KP53803 58 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 COX17Q14061 63 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 URB1-AS1Q96HZ7 61 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 LY6LH3BQJ8 138 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 LINC00336Q6ZUF6 198 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 NCOR2Q9Y618 2525 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 A0A087WYN8 130 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 PKD1L2Q7Z442 2459 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 TLN1Q9Y490 2541 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 ODF3BA8MYP8 253 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 LCA10Q71F78 164 aa6.36□□□□□ -1.39
LIMCH1-218ENST00000513024 IGF2RP11717 2491 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 SPINK1P00995 79 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 TSHBP01222 138 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 SYCNQ0VAF6 134 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 USP9XQ93008 2570 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 C1orf64Q8NEQ6 169 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 FN1P02751 2386 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 TRBV6-8A0A0A6YYG3 113 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 C10orf25Q5T742 122 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 PRR9Q5T870 116 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 WDFY3Q8IZQ1 3526 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 LINC01006Q8NI28 216 aa6.35□□□□□ -1.39
LIMCH1-218ENST00000513024 Q9UF83 564 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 KTN1-AS1Q86SY8 53 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 LINC00474Q9P2X8 69 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 ADAMTS20P59510 1910 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 F8P00451 2351 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 CD164L2Q6UWJ8 174 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 FAM19A4Q96LR4 140 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 CELSR3Q9NYQ7 3312 aa6.34□□□□□ -1.39
LIMCH1-218ENST00000513024 CYP4F30PQ9H0H9 118 aa6.34□□□□□ -1.4
LIMCH1-218ENST00000513024 FRYQ5TBA9 3013 aa6.34□□□□□ -1.4
LIMCH1-218ENST00000513024 MUC4Q99102 2169 aa6.34□□□□□ -1.4
LIMCH1-218ENST00000513024 IGIPA6NJ69 53 aa6.33□□□□□ -1.4
LIMCH1-218ENST00000513024 ABCA12Q86UK0 2595 aa6.33□□□□□ -1.4
LIMCH1-218ENST00000513024 ZFYVE26Q68DK2 2539 aa6.33□□□□□ -1.4
LIMCH1-218ENST00000513024 NBEAQ8NFP9 2946 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 C10orf99Q6UWK7 81 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 C7orf65Q6ZTY9 151 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 DEFB114Q30KQ6 69 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 SBSPONQ8IVN8 264 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 PSMG3-AS1Q96PY0 264 aa6.32□□□□□ -1.4
LIMCH1-218ENST00000513024 LINC01561Q8N1V8 128 aa6.31□□□□□ -1.4
LIMCH1-218ENST00000513024 X6R8D5 127 aa6.31□□□□□ -1.4
LIMCH1-218ENST00000513024 Q8IZM0 81 aa6.31□□□□□ -1.4
LIMCH1-218ENST00000513024 SMCPP49901 116 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-218ENST00000513024 A8MUN3 132 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 CNFNQ9BYD5 112 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 USP9YO00507 2555 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 TSPEAR-AS2P59090 65 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 C1orf134Q5TEV5 83 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 LOC100131303A0A0U1RQF7 123 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 WIPF1O43516 503 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 PRO0461Q9UI25 63 aa6.3□□□□□ -1.4
LIMCH1-218ENST00000513024 LINC00959A0A1B0GUT2 108 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 M0R2N4 97 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 ADAMTSL4-AS1Q5T5F5 129 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 IGLV4-69A0A075B6H9 119 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 IGHV6-1A0A0B4J1U7 121 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 SMIM29Q86T20 159 aa6.29□□□□□ -1.4
LIMCH1-218ENST00000513024 ACYP2P14621 99 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms