RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FAM222AQ5U5X8 452 aa6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 LRRC75A-AS1Q8N1F1 130 aa6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 OVOL2Q9BRP0 275 aa6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 GYPEP15421 78 aa6.45□□□□□ -1.38
LIMCH1-215ENST00000512632 IBA57-AS1B1ANH7 110 aa6.45□□□□□ -1.38
LIMCH1-215ENST00000512632 NCR3O14931 201 aa6.45□□□□□ -1.38
LIMCH1-215ENST00000512632 IGKV3D-7A0A0C4DH55 119 aa6.45□□□□□ -1.38
LIMCH1-215ENST00000512632 SDIM1Q6ZPB5 146 aa6.44□□□□□ -1.38
LIMCH1-215ENST00000512632 CMC4P56277 68 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-215ENST00000512632 IMUPQ9GZP8 106 aa6.44□□□□□ -1.38
LIMCH1-215ENST00000512632 ITPR2Q14571 2701 aa6.44□□□□□ -1.38
LIMCH1-215ENST00000512632 IGLV10-54A0A075B6I4 117 aa6.43□□□□□ -1.38
LIMCH1-215ENST00000512632 H0YGX0 51 aa6.43□□□□□ -1.38
LIMCH1-215ENST00000512632 DEFB4AO15263 64 aa6.43□□□□□ -1.38
LIMCH1-215ENST00000512632 C9orf153Q5TBE3 101 aa6.42□□□□□ -1.38
LIMCH1-215ENST00000512632 NBPF19A0A087WUL8 3843 aa6.42□□□□□ -1.38
LIMCH1-215ENST00000512632 LINC00846Q9NV44 126 aa6.42□□□□□ -1.38
LIMCH1-215ENST00000512632 SS18Q15532 418 aa6.42□□□□□ -1.38
LIMCH1-215ENST00000512632 Q8N3U1 123 aa6.42□□□□□ -1.38
LIMCH1-215ENST00000512632 RNASE1P07998 156 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-215ENST00000512632 C9orf116Q5BN46 136 aaPredicted RBP6.41□□□□□ -1.38
LIMCH1-215ENST00000512632 PPDPFQ9H3Y8 114 aa6.41□□□□□ -1.38
LIMCH1-215ENST00000512632 KLK5Q9Y337 293 aaPredicted RBP6.4□□□□□ -1.38
LIMCH1-215ENST00000512632 A0A087WVE0 104 aa6.4□□□□□ -1.38
LIMCH1-215ENST00000512632 LINC00269Q8N2A0 174 aa6.4□□□□□ -1.38
LIMCH1-215ENST00000512632 LINC00482Q8N8I6 264 aa6.4□□□□□ -1.39
LIMCH1-215ENST00000512632 SVIPQ8NHG7 77 aa6.4□□□□□ -1.39
LIMCH1-215ENST00000512632 C3orf22Q8N5N4 141 aa6.39□□□□□ -1.39
LIMCH1-215ENST00000512632 FASNP49327 2511 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-215ENST00000512632 LINC00526Q96FQ7 95 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 FAM110AQ9BQ89 295 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 ORMDL1Q9P0S3 153 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 ANGP03950 147 aaKnown RBP6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 PRO0255Q9UI72 69 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 VWFP04275 2813 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 CXCL5P42830 114 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 UQCRQO14949 82 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 KRTAP1-1Q07627 177 aa6.38□□□□□ -1.39
LIMCH1-215ENST00000512632 Q8IZM0 81 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 KIR2DL5BQ8NHK3 375 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 CFAP161Q6P656 301 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 NANOS2P60321 138 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 X6R8D5 127 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 SMR3AQ99954 134 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 C16orf95Q9H693 158 aa6.37□□□□□ -1.39
LIMCH1-215ENST00000512632 A0A1B0GUV1 79 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 SPATA3Q8NHX4 192 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 CHCHD10Q8WYQ3 142 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 TMEM126AQ9H061 195 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 A0A1B0GX51 115 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 HIST1H4AP62805 103 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 HTN3P15516 51 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 DEFB135Q30KP9 77 aa6.36□□□□□ -1.39
LIMCH1-215ENST00000512632 COX7CP15954 63 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 OBSCN-AS1Q96MR7 158 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 HELZ2Q9BYK8 2649 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 hADV29S1A0JD25 119 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 KRTAP10-3P60369 221 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 KIAA0087Q14695 138 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 C6orf99Q4VX62 202 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 WFDC9Q8NEX5 89 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 LY6G6DO95868 133 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 Q8NDZ9 215 aa6.35□□□□□ -1.39
LIMCH1-215ENST00000512632 C6orf223Q8N319 242 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 Q8N814 137 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 C2orf48Q96LS8 159 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 REG3AQ06141 175 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 CD164L2Q6UWJ8 174 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 LINC00612Q8N6U2 182 aa6.34□□□□□ -1.39
LIMCH1-215ENST00000512632 ATOX1O00244 68 aa6.34□□□□□ -1.4
LIMCH1-215ENST00000512632 RPL18AQ02543 176 aaKnown RBP6.34□□□□□ -1.4
LIMCH1-215ENST00000512632 S100A7L2Q5SY68 101 aa6.34□□□□□ -1.4
LIMCH1-215ENST00000512632 Q6JHZ5 121 aa6.34□□□□□ -1.4
LIMCH1-215ENST00000512632 TENM4Q6N022 2769 aa6.34□□□□□ -1.4
LIMCH1-215ENST00000512632 C10orf25Q5T742 122 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 UNQ6190/PRO20217Q6UXQ8 127 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 LINC01561Q8N1V8 128 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 CYSTM1Q9H1C7 97 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 LOC107984640A0A0U1RRK4 108 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 CCKP06307 115 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 HILS1P60008 231 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 UNC79Q9P2D8 2635 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 PDZD2O15018 2839 aa6.33□□□□□ -1.4
LIMCH1-215ENST00000512632 HECTD1Q9ULT8 2610 aa6.32□□□□□ -1.4
LIMCH1-215ENST00000512632 USP17L23D6RBM5 183 aa6.32□□□□□ -1.4
LIMCH1-215ENST00000512632 ATRQ13535 2644 aa6.32□□□□□ -1.4
LIMCH1-215ENST00000512632 DAD1P61803 113 aa6.31□□□□□ -1.4
LIMCH1-215ENST00000512632 TMEM256-PLSCR3K7ERE1 68 aa6.31□□□□□ -1.4
LIMCH1-215ENST00000512632 FAM19A1Q7Z5A9 133 aa6.31□□□□□ -1.4
LIMCH1-215ENST00000512632 ANK3Q12955 4377 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-215ENST00000512632 JMJD7-PLA2G4BH0Y9G9 81 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 SPAG11BQ08648 103 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 KLK12Q9UKR0 248 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 IGHV4-28A0A0C4DH34 117 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 TRAV23DV6A0A075B6W5 121 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 CELA1Q9UNI1 258 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 NDUFC2O95298 119 aa6.3□□□□□ -1.4
LIMCH1-215ENST00000512632 SMIM9A6NGZ8 99 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 ENHOQ6UWT2 76 aa6.29□□□□□ -1.4
LIMCH1-215ENST00000512632 LAMTOR3Q9UHA4 124 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms