RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CMC4P56277 68 aaPredicted RBP6.69□□□□□ -1.34
USP53-207ENST00000510852 CHCHD1Q96BP2 118 aaKnown RBP6.69□□□□□ -1.34
USP53-207ENST00000510852 SCO2A0A1W2PP80 73 aa6.69□□□□□ -1.34
USP53-207ENST00000510852 ACYP1P07311 99 aa6.69□□□□□ -1.34
USP53-207ENST00000510852 TMEM170BQ5T4T1 132 aa6.69□□□□□ -1.34
USP53-207ENST00000510852 C9orf66Q5T8R8 295 aa6.69□□□□□ -1.34
USP53-207ENST00000510852 NOTCH3Q9UM47 2321 aa6.68□□□□□ -1.34
USP53-207ENST00000510852 TSPEAR-AS2P59090 65 aa6.68□□□□□ -1.34
USP53-207ENST00000510852 MRPL35Q9NZE8 188 aaKnown RBP6.68□□□□□ -1.34
USP53-207ENST00000510852 PHLDA3Q9Y5J5 127 aa6.68□□□□□ -1.34
USP53-207ENST00000510852 AGRNO00468 2067 aa6.67□□□□□ -1.34
USP53-207ENST00000510852 IGHV1-24A0A0C4DH33 117 aa6.67□□□□□ -1.34
USP53-207ENST00000510852 PRAC2D3DTV9 90 aa6.67□□□□□ -1.34
USP53-207ENST00000510852 RMI2Q96E14 147 aa6.67□□□□□ -1.34
USP53-207ENST00000510852 PSMG4Q5JS54 123 aa6.67□□□□□ -1.34
USP53-207ENST00000510852 DNAH3Q8TD57 4116 aa6.66□□□□□ -1.34
USP53-207ENST00000510852 KRTAP4-16G5E9R7 235 aaPredicted RBP6.66□□□□□ -1.34
USP53-207ENST00000510852 DEFB1P60022 68 aa6.66□□□□□ -1.34
USP53-207ENST00000510852 IGKV2-40A0A087WW87 121 aaPredicted RBP6.66□□□□□ -1.34
USP53-207ENST00000510852 IGKV2D-40P01614 121 aaPredicted RBP6.66□□□□□ -1.34
USP53-207ENST00000510852 FXYD2P54710 66 aa6.66□□□□□ -1.34
USP53-207ENST00000510852 PKD1L1Q8TDX9 2849 aa6.66□□□□□ -1.34
USP53-207ENST00000510852 LOC107984156A0A0G2JMH3 177 aa6.65□□□□□ -1.34
USP53-207ENST00000510852 ARL17AQ8IVW1 177 aa6.65□□□□□ -1.34
USP53-207ENST00000510852 LINC00269Q8N2A0 174 aa6.65□□□□□ -1.34
USP53-207ENST00000510852 SCGB3A1Q96QR1 104 aa6.65□□□□□ -1.34
USP53-207ENST00000510852 A0A1B0GW54 56 aa6.65□□□□□ -1.35
USP53-207ENST00000510852 DEFB131AP59861 70 aa6.65□□□□□ -1.35
USP53-207ENST00000510852 KRTAP21-3Q3LHN1 58 aa6.65□□□□□ -1.35
USP53-207ENST00000510852 MRPL51Q4U2R6 128 aaKnown RBP6.65□□□□□ -1.35
USP53-207ENST00000510852 ESRGQ1W209 222 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 RETNLBQ9BQ08 111 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 SMIM7Q9BQ49 75 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 OCR1Q9BZK8 76 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 NHP2Q9NX24 153 aaKnown RBP6.64□□□□□ -1.35
USP53-207ENST00000510852 SORL1Q92673 2214 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 IGLV2-11P01706 119 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 GDF5OSQ5U4N7 250 aa6.64□□□□□ -1.35
USP53-207ENST00000510852 IGHV3-16A0A0C4DH30 117 aa6.63□□□□□ -1.35
USP53-207ENST00000510852 XCL1P47992 114 aa6.63□□□□□ -1.35
USP53-207ENST00000510852 SYCNQ0VAF6 134 aa6.63□□□□□ -1.35
USP53-207ENST00000510852 PRR4Q16378 134 aa6.63□□□□□ -1.35
USP53-207ENST00000510852 NDUFA12Q9UI09 145 aa6.63□□□□□ -1.35
USP53-207ENST00000510852 TRAV13-2A0A0B4J235 113 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 C19orf71A6NCJ1 209 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 C9orf47Q6ZRZ4 202 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 IGHV4-4A0A075B6R2 117 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 TMSB15BA0A087X1C1 80 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 A0A0J9YX75 114 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 TRBV6-1A0A0K0K1D8 114 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 GNRH2O43555 120 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 NDUFC1O43677 76 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 Q86TA4 180 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 Q8TAT8 98 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 C8orf17Q9NRJ1 99 aa6.62□□□□□ -1.35
USP53-207ENST00000510852 DHRS4-AS1Q9P1J3 65 aa6.61□□□□□ -1.35
USP53-207ENST00000510852 WFDC10AQ9H1F0 79 aa6.61□□□□□ -1.35
USP53-207ENST00000510852 H3BMM0 161 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 IGKV3-20P01619 116 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 KRTAP10-11P60412 298 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 FAM229BQ4G0N7 80 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 DEFB121Q5J5C9 76 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 ORMDL3Q8N138 153 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 ZFAND2AQ8N6M9 145 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 C16orf90A8MZG2 172 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 SLC25A20O43772 301 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 SDIM1Q6ZPB5 146 aa6.6□□□□□ -1.35
USP53-207ENST00000510852 A0A0J9YXY3 114 aa6.59□□□□□ -1.35
USP53-207ENST00000510852 UBE2D3P61077 147 aa6.59□□□□□ -1.35
USP53-207ENST00000510852 UBE2D2P62837 147 aa6.59□□□□□ -1.35
USP53-207ENST00000510852 MGST1P10620 155 aaKnown RBP6.59□□□□□ -1.35
USP53-207ENST00000510852 KLKP1Q107X0 134 aa6.59□□□□□ -1.35
USP53-207ENST00000510852 LENEPQ9Y5L5 61 aa6.59□□□□□ -1.35
USP53-207ENST00000510852 A8MTW9 85 aa6.58□□□□□ -1.36
USP53-207ENST00000510852 FAM19A2Q8N3H0 131 aa6.58□□□□□ -1.36
USP53-207ENST00000510852 NPYP01303 97 aa6.58□□□□□ -1.36
USP53-207ENST00000510852 SPTSSBQ8NFR3 76 aa6.58□□□□□ -1.36
USP53-207ENST00000510852 MGAM2Q2M2H8 2515 aa6.58□□□□□ -1.36
USP53-207ENST00000510852 H3BVH4 76 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 CRIP1P50238 77 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 FXYD7P58549 80 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 SPINK13Q1W4C9 94 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 LUZP6Q538Z0 58 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 CASC10Q5T4H9 136 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 PRR9Q5T870 116 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 SFTA2Q6UW10 78 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 LINC00322Q6ZN03 302 aaPredicted RBP6.57□□□□□ -1.36
USP53-207ENST00000510852 UBE2WQ96B02 151 aa6.57□□□□□ -1.36
USP53-207ENST00000510852 ASB16-AS1Q495Z4 193 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 Q8N814 137 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 LINC00476Q8WZB0 136 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 TMEM141Q96I45 108 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 XAGE1AQ9HD64 81 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 NOTCH1P46531 2555 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 NBEAL1Q6ZS30 2694 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 IGKV2D-26A0A0A0MRZ7 120 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 MYMXA0A1B0GTQ4 84 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 SH2D1AO60880 128 aa6.55□□□□□ -1.36
USP53-207ENST00000510852 KPRPQ5T749 579 aaPredicted RBP6.54□□□□□ -1.36
USP53-207ENST00000510852 SUMO4Q6EEV6 95 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms