RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 EP300Q09472 2414 aaPredicted RBP2.08□□□□□ -2.08
NUP54-209ENST00000510569 CACNA1DQ01668 2161 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 MED13Q9UHV7 2174 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 UMAD1C9J7I0 102 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 H3BSH0 61 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 H3BUT2 72 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 MIFP14174 115 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 WFDC2Q14508 124 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 ELOBQ15370 118 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 OR8B3Q8NGG8 313 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 KLF14Q8TD94 323 aaPredicted RBP2.08□□□□□ -2.08
NUP54-209ENST00000510569 C20orf166-AS1Q96NR2 134 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 NXT2Q9NPJ8 142 aaKnown RBP2.08□□□□□ -2.08
NUP54-209ENST00000510569 DOCK11Q5JSL3 2073 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 PKD1L2Q7Z442 2459 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 PCNX2A6NKB5 2137 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 LOC400499M0QZD8 3231 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 PRR14LQ5THK1 2151 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 MUC4Q99102 2169 aa2.08□□□□□ -2.08
NUP54-209ENST00000510569 CELSR3Q9NYQ7 3312 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 TNCP24821 2201 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 DIDO1Q9BTC0 2240 aaKnown RBP2.07□□□□□ -2.08
NUP54-209ENST00000510569 DMXL2Q8TDJ6 3036 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 CACNA1BQ00975 2339 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 CFAP46Q8IYW2 2715 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 IGF2RP11717 2491 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 IGHV3-64A0A075B6Q5 118 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 TRBV7-1A0A0A6YYK4 115 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 TRAV13-2A0A0B4J235 113 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 TCRBV4S1A1TA0A5B7 111 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 C16orf90A8MZG2 172 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 F2Z2F3 143 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 M0R135 149 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 BCE1O60756 84 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 PPYP01298 95 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 UBE2G1P62253 170 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 IGFBP7Q16270 282 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 C9orf116Q5BN46 136 aaPredicted RBP2.07□□□□□ -2.08
NUP54-209ENST00000510569 CYP2G1PQ6ZSU1 146 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 C6orf201Q7Z4U5 140 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 TMEM254Q8TBM7 123 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 LINC00474Q9P2X8 69 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 KNTC1P50748 2209 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 PLCE1Q9P212 2302 aa2.07□□□□□ -2.08
NUP54-209ENST00000510569 ANKRD11Q6UB99 2663 aaPredicted RBP2.06□□□□□ -2.08
NUP54-209ENST00000510569 ASH1LQ9NR48 2969 aaKnown RBP2.06□□□□□ -2.08
NUP54-209ENST00000510569 FAM208BQ5VWN6 2430 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 H7BZZ5 65 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 ACYP1P07311 99 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 DEFB133Q30KQ1 61 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 CFAP126Q5VTH2 177 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 ZNF818PQ6ZRF7 136 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 CMTM2Q8TAZ6 248 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 ODF3Q96PU9 254 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 CYSTM1Q9H1C7 97 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 CDC42SE1Q9NRR8 79 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 UBR5O95071 2799 aaPredicted RBP2.06□□□□□ -2.08
NUP54-209ENST00000510569 KALRNO60229 2985 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 ZFYVE26Q68DK2 2539 aa2.06□□□□□ -2.08
NUP54-209ENST00000510569 MALRD1Q5VYJ5 2156 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 ODF3BA8MYP8 253 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 ERC2-IT1O76042 136 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 UBE2D3P61077 147 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 UBE2D2P62837 147 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 SERF2P84101 59 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 KLKP1Q107X0 134 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 PIGYQ3MUY2 71 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 VMO1Q7Z5L0 202 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 DEFB124Q8NES8 71 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 ZCCHC13Q8WW36 166 aaKnown RBP2.05□□□□□ -2.08
NUP54-209ENST00000510569 FAM167A-AS1Q96KT0 104 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 TIMM21Q9BVV7 248 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 HIGD1BQ9P298 99 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 MINOS1-NBL1R4GNA1 71 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 INTS1Q8N201 2190 aaKnown RBP2.05□□□□□ -2.08
NUP54-209ENST00000510569 CADP27708 2225 aa2.05□□□□□ -2.08
NUP54-209ENST00000510569 PTPRZ1P23471 2315 aaPredicted RBP2.05□□□□□ -2.08
NUP54-209ENST00000510569 ADGRG4Q8IZF6 3080 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 TRAV10A0A0B4J240 114 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 HCG22E2RYF7 251 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 SPTBN2O15020 2390 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 EFNA4P52798 201 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 ATMQ13315 3056 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 LYPD5Q6UWN5 251 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 C2orf82Q6UX34 121 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.04□□□□□ -2.08
NUP54-209ENST00000510569 LINC00643Q86TS7 51 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 NDUFA11Q86Y39 141 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 SPTSSBQ8NFR3 76 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 TVP23CQ96ET8 276 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 SMG1Q96Q15 3661 aaKnown RBP2.04□□□□□ -2.08
NUP54-209ENST00000510569 ARL2-SNX15V9GYD0 113 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 LAMA5O15230 3695 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 BOD1L1Q8NFC6 3051 aa2.04□□□□□ -2.08
NUP54-209ENST00000510569 NAV3Q8IVL0 2385 aa2.03□□□□□ -2.08
NUP54-209ENST00000510569 UTP20O75691 2785 aaKnown RBP2.03□□□□□ -2.08
NUP54-209ENST00000510569 HELZ2Q9BYK8 2649 aaKnown RBP2.03□□□□□ -2.08
NUP54-209ENST00000510569 MIR22HGQ0VDD5 57 aa2.03□□□□□ -2.08
NUP54-209ENST00000510569 TMEM170BQ5T4T1 132 aa2.03□□□□□ -2.08
NUP54-209ENST00000510569 PRO1854Q9UHT4 67 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms