RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 WIPF1O43516 503 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 COX7CP15954 63 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 C6orf226Q5I0X4 101 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 ATP5EP2Q5VTU8 51 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 GAGE2AQ6NT46 116 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 CCKP06307 115 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 LINC00482Q8N8I6 264 aa6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 ANK3Q12955 4377 aaKnown RBP6.35□□□□□ -1.39
PDGFRA-208ENST00000509490 LECT2O14960 151 aa6.34□□□□□ -1.39
PDGFRA-208ENST00000509490 GYPEP15421 78 aa6.34□□□□□ -1.39
PDGFRA-208ENST00000509490 C9orf129Q5T035 196 aaKnown RBP6.34□□□□□ -1.39
PDGFRA-208ENST00000509490 PAX4O43316 350 aa6.34□□□□□ -1.39
PDGFRA-208ENST00000509490 S100A7L2Q5SY68 101 aa6.34□□□□□ -1.39
PDGFRA-208ENST00000509490 H3BQ85 93 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 Q8N814 137 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 TRBV10-3A0A0K0K1G6 114 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 RPL18AQ02543 176 aaKnown RBP6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 LINC00846Q9NV44 126 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 J3QL48 77 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 TMEM256-PLSCR3K7ERE1 68 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 PLA2G2AP14555 144 aa6.33□□□□□ -1.4
PDGFRA-208ENST00000509490 TEX15Q9BXT5 2789 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 PFN2P35080 140 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 C5orf47Q569G3 176 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 C14orf132Q9NPU4 83 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 GVQW2A0A096LPI5 108 aaPredicted RBP6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 A0A0J9YWU9 116 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 IGHV4-30-4P0DP06 118 aa6.32□□□□□ -1.4
PDGFRA-208ENST00000509490 BCE1O60756 84 aa6.31□□□□□ -1.4
PDGFRA-208ENST00000509490 XCL1P47992 114 aa6.31□□□□□ -1.4
PDGFRA-208ENST00000509490 NAV2Q8IVL1 2488 aa6.31□□□□□ -1.4
PDGFRA-208ENST00000509490 ACACBO00763 2458 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 LOC110117498A0A087WWA1 95 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 RPS28P62857 69 aaKnown RBP6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 C9orf153Q5TBE3 101 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 MYO18BQ8IUG5 2567 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 CSMD2Q7Z408 3487 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 PTPN13Q12923 2485 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 IGKV3OR2-268A0A0C4DH90 116 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 KRTAP10-3P60369 221 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 PRR34Q9NV39 138 aa6.3□□□□□ -1.4
PDGFRA-208ENST00000509490 DEFB130BP0DP73 79 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 DEFB130AP0DP74 79 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 OR13C6PQ8NH95 151 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 CHCHD10Q8WYQ3 142 aaPredicted RBP6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 UPK3BQ9BT76 320 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 CHD6Q8TD26 2715 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 USP24Q9UPU5 2620 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 NCR3O14931 201 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 LINC00575Q6W349 94 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 SERP2Q8N6R1 65 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 MYO9AB2RTY4 2548 aa6.29□□□□□ -1.4
PDGFRA-208ENST00000509490 IGLV6-57P01721 117 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 SETXQ7Z333 2677 aaKnown RBP6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 ZNF462Q96JM2 2506 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 ITPR3Q14573 2671 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 REG3AQ06141 175 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 C9orf66Q5T8R8 295 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 C6orf223Q8N319 242 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 POLQO75417 2590 aa6.28□□□□□ -1.4
PDGFRA-208ENST00000509490 LELP1Q5T871 98 aa6.27□□□□□ -1.41
PDGFRA-208ENST00000509490 APCP25054 2843 aa6.27□□□□□ -1.41
PDGFRA-208ENST00000509490 LINC00269Q8N2A0 174 aa6.27□□□□□ -1.41
PDGFRA-208ENST00000509490 TRBV7-6A0A0J9YX20 115 aa6.27□□□□□ -1.41
PDGFRA-208ENST00000509490 MIFP14174 115 aa6.26□□□□□ -1.41
PDGFRA-208ENST00000509490 PDE6GP18545 87 aa6.26□□□□□ -1.41
PDGFRA-208ENST00000509490 APOC4P55056 127 aa6.26□□□□□ -1.41
PDGFRA-208ENST00000509490 SMIM20Q8N5G0 67 aa6.26□□□□□ -1.41
PDGFRA-208ENST00000509490 Q8NDZ9 215 aa6.26□□□□□ -1.41
PDGFRA-208ENST00000509490 ZNF469Q96JG9 3925 aaPredicted RBP6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 SLPIP03973 132 aa6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 Q8NAQ8 132 aa6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 MAP1AP78559 2803 aaPredicted RBP6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 LRRK2Q5S007 2527 aa6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 USP17L23D6RBM5 183 aa6.25□□□□□ -1.41
PDGFRA-208ENST00000509490 hADV29S1A0JD25 119 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 TMEM258P61165 79 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 Q6ZQT0 140 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 NDUFC2-KCTD14E9PQ53 114 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 H3BNG1 76 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 C6orf99Q4VX62 202 aa6.24□□□□□ -1.41
PDGFRA-208ENST00000509490 PDZD2O15018 2839 aa6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 IGKV3D-7A0A0C4DH55 119 aa6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 ANGP03950 147 aaKnown RBP6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 SPAG11BQ08648 103 aa6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 C11orf68Q9H3H3 251 aaKnown RBP6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 FAM208BQ5VWN6 2430 aa6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 NOTCH3Q9UM47 2321 aa6.23□□□□□ -1.41
PDGFRA-208ENST00000509490 EPG5Q9HCE0 2579 aa6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 GHRHP01286 108 aa6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 PRR3P79522 188 aaKnown RBP6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 NBPF19A0A087WUL8 3843 aa6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 J3KT08 172 aa6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 DAD1P61803 113 aa6.22□□□□□ -1.41
PDGFRA-208ENST00000509490 UBL5Q9BZL1 73 aa6.21□□□□□ -1.41
PDGFRA-208ENST00000509490 CENPEQ02224 2701 aa6.21□□□□□ -1.42
PDGFRA-208ENST00000509490 SPART-AS1P0CW21 52 aa6.21□□□□□ -1.42
PDGFRA-208ENST00000509490 RBM3P98179 157 aaKnown RBP6.21□□□□□ -1.42
PDGFRA-208ENST00000509490 CLPSL2Q6UWE3 100 aa6.21□□□□□ -1.42
PDGFRA-208ENST00000509490 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms