RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KRTAP7-1Q8IUC3 87 aa12.55□□□□□ -0.4
SQSTM1-210ENST00000506042 CTDSP1Q9GZU7 261 aa12.55□□□□□ -0.4
SQSTM1-210ENST00000506042 LINC00469Q8N7U9 141 aa12.54□□□□□ -0.4
SQSTM1-210ENST00000506042 TYMSOSQ8TAI1 123 aa12.54□□□□□ -0.4
SQSTM1-210ENST00000506042 AMELXQ99217 191 aa12.54□□□□□ -0.4
SQSTM1-210ENST00000506042 XAGE1AQ9HD64 81 aa12.54□□□□□ -0.4
SQSTM1-210ENST00000506042 BCE1O60756 84 aa12.53□□□□□ -0.4
SQSTM1-210ENST00000506042 PNRC1Q12796 327 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-210ENST00000506042 LINC01549A6NIU2 74 aa12.52□□□□□ -0.41
SQSTM1-210ENST00000506042 TSPAN13O95857 204 aa12.52□□□□□ -0.41
SQSTM1-210ENST00000506042 MT-ND4LP03901 98 aa12.52□□□□□ -0.41
SQSTM1-210ENST00000506042 FAM19A3Q7Z5A8 133 aa12.52□□□□□ -0.41
SQSTM1-210ENST00000506042 ANAPC16Q96DE5 110 aa12.52□□□□□ -0.41
SQSTM1-210ENST00000506042 C9JQL5 133 aa12.51□□□□□ -0.41
SQSTM1-210ENST00000506042 NKAPP1Q8N9T2 125 aa12.49□□□□□ -0.41
SQSTM1-210ENST00000506042 TIMM17AQ99595 171 aa12.49□□□□□ -0.41
SQSTM1-210ENST00000506042 UBE2AP49459 152 aa12.48□□□□□ -0.41
SQSTM1-210ENST00000506042 LINC00173Q6ZV60 143 aa12.48□□□□□ -0.41
SQSTM1-210ENST00000506042 IGIPA6NJ69 53 aa12.47□□□□□ -0.41
SQSTM1-210ENST00000506042 SRSF3P84103 164 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-210ENST00000506042 CDKN2A-AS1Q9UH64 79 aa12.47□□□□□ -0.41
SQSTM1-210ENST00000506042 PDZD11Q5EBL8 140 aa12.45□□□□□ -0.42
SQSTM1-210ENST00000506042 ZC2HC1BQ5TFG8 222 aa12.44□□□□□ -0.42
SQSTM1-210ENST00000506042 ERASQ7Z444 233 aa12.43□□□□□ -0.42
SQSTM1-210ENST00000506042 COX7B2Q8TF08 81 aa12.43□□□□□ -0.42
SQSTM1-210ENST00000506042 CTAG1AP78358 180 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 FAM229BQ4G0N7 80 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 TOMM6Q96B49 74 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 LINC00167Q96N53 147 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 SCGB3A1Q96QR1 104 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 LPAP08519 4548 aa12.42□□□□□ -0.42
SQSTM1-210ENST00000506042 IGKV2D-26A0A0A0MRZ7 120 aa12.41□□□□□ -0.42
SQSTM1-210ENST00000506042 RPL37AP8A6NKH3 93 aa12.41□□□□□ -0.42
SQSTM1-210ENST00000506042 A0A087X002 238 aa12.4□□□□□ -0.42
SQSTM1-210ENST00000506042 TINCRA0A1B0GVN0 87 aa12.4□□□□□ -0.42
SQSTM1-210ENST00000506042 H3BRM9 83 aa12.4□□□□□ -0.42
SQSTM1-210ENST00000506042 ATP5LO75964 103 aa12.4□□□□□ -0.42
SQSTM1-210ENST00000506042 RAB14P61106 215 aa12.39□□□□□ -0.43
SQSTM1-210ENST00000506042 MRPL18Q9H0U6 180 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-210ENST00000506042 SMIM1B2RUZ4 78 aa12.38□□□□□ -0.43
SQSTM1-210ENST00000506042 LINC00304Q8N9R0 145 aa12.38□□□□□ -0.43
SQSTM1-210ENST00000506042 CDIP1Q9H305 208 aa12.38□□□□□ -0.43
SQSTM1-210ENST00000506042 IGLV5-37A0A075B6J1 123 aa12.37□□□□□ -0.43
SQSTM1-210ENST00000506042 GAGE10A6NGK3 116 aa12.37□□□□□ -0.43
SQSTM1-210ENST00000506042 RAB5BP61020 215 aa12.35□□□□□ -0.43
SQSTM1-210ENST00000506042 RPL24P83731 157 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-210ENST00000506042 IGLV5-45A0A087WSX0 123 aa12.33□□□□□ -0.44
SQSTM1-210ENST00000506042 TRAV9-1A0A075B6T8 112 aa12.32□□□□□ -0.44
SQSTM1-210ENST00000506042 SMCO4Q9NRQ5 59 aa12.32□□□□□ -0.44
SQSTM1-210ENST00000506042 PMVKQ15126 192 aa12.31□□□□□ -0.44
SQSTM1-210ENST00000506042 SFTA2Q6UW10 78 aa12.31□□□□□ -0.44
SQSTM1-210ENST00000506042 IGKV2-28A0A075B6P5 120 aa12.3□□□□□ -0.44
SQSTM1-210ENST00000506042 IGKV2D-28P01615 120 aa12.3□□□□□ -0.44
SQSTM1-210ENST00000506042 S100PP25815 95 aa12.3□□□□□ -0.44
SQSTM1-210ENST00000506042 TPRXLQ17RH7 258 aa12.3□□□□□ -0.44
SQSTM1-210ENST00000506042 FAM19A1Q7Z5A9 133 aa12.3□□□□□ -0.44
SQSTM1-210ENST00000506042 SPINK8P0C7L1 97 aa12.29□□□□□ -0.44
SQSTM1-210ENST00000506042 GNB1LQ9BYB4 327 aa12.29□□□□□ -0.44
SQSTM1-210ENST00000506042 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
SQSTM1-210ENST00000506042 COX17Q14061 63 aa12.28□□□□□ -0.44
SQSTM1-210ENST00000506042 COX19Q49B96 90 aa12.28□□□□□ -0.44
SQSTM1-210ENST00000506042 FA2HQ7L5A8 372 aa12.28□□□□□ -0.44
SQSTM1-210ENST00000506042 IGLV7-46A0A075B6I9 117 aa12.27□□□□□ -0.45
SQSTM1-210ENST00000506042 PFN2P35080 140 aa12.27□□□□□ -0.45
SQSTM1-210ENST00000506042 SPAG11AQ6PDA7 123 aa12.27□□□□□ -0.45
SQSTM1-210ENST00000506042 KRTAP13-1Q8IUC0 172 aa12.27□□□□□ -0.45
SQSTM1-210ENST00000506042 ANAPC11Q9NYG5 84 aa12.27□□□□□ -0.45
SQSTM1-210ENST00000506042 KIAA1644Q3SXP7 199 aa12.26□□□□□ -0.45
SQSTM1-210ENST00000506042 C4orf48Q5BLP8 95 aa12.26□□□□□ -0.45
SQSTM1-210ENST00000506042 RETNLBQ9BQ08 111 aa12.26□□□□□ -0.45
SQSTM1-210ENST00000506042 KRTAP13-2Q52LG2 175 aa12.25□□□□□ -0.45
SQSTM1-210ENST00000506042 KRTAP9-2Q9BYQ4 174 aa12.25□□□□□ -0.45
SQSTM1-210ENST00000506042 TMEM126AQ9H061 195 aa12.24□□□□□ -0.45
SQSTM1-210ENST00000506042 PRLHP81277 87 aa12.23□□□□□ -0.45
SQSTM1-210ENST00000506042 ZNF706Q9Y5V0 76 aaPredicted RBP12.23□□□□□ -0.45
SQSTM1-210ENST00000506042 ADCYAP1P18509 176 aa12.22□□□□□ -0.45
SQSTM1-210ENST00000506042 NDUFA6P56556 154 aa12.22□□□□□ -0.45
SQSTM1-210ENST00000506042 CBLN2Q8IUK8 224 aa12.22□□□□□ -0.45
SQSTM1-210ENST00000506042 ERG28Q9UKR5 140 aa12.22□□□□□ -0.45
SQSTM1-210ENST00000506042 LINC01546A6NGU7 62 aa12.21□□□□□ -0.45
SQSTM1-210ENST00000506042 SND1-IT1Q9HBX3 110 aa12.2□□□□□ -0.46
SQSTM1-210ENST00000506042 A0A1B0GVG6 124 aa12.18□□□□□ -0.46
SQSTM1-210ENST00000506042 IGLC3P0DOY3 106 aa12.18□□□□□ -0.46
SQSTM1-210ENST00000506042 VPREB1P12018 145 aa12.18□□□□□ -0.46
SQSTM1-210ENST00000506042 HIGD2AQ9BW72 106 aa12.18□□□□□ -0.46
SQSTM1-210ENST00000506042 FP248Q71RG6 208 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-210ENST00000506042 LINC00337Q8N6G1 96 aa12.17□□□□□ -0.46
SQSTM1-210ENST00000506042 PPDPFQ9H3Y8 114 aa12.17□□□□□ -0.46
SQSTM1-210ENST00000506042 IGLV5-39A0A0G2JS06 123 aa12.16□□□□□ -0.46
SQSTM1-210ENST00000506042 ATP6V1G1O75348 118 aa12.16□□□□□ -0.46
SQSTM1-210ENST00000506042 S100A12P80511 92 aa12.16□□□□□ -0.46
SQSTM1-210ENST00000506042 UQCC3Q6UW78 93 aa12.16□□□□□ -0.46
SQSTM1-210ENST00000506042 TMEM238C9JI98 176 aa12.15□□□□□ -0.46
SQSTM1-210ENST00000506042 FABP9Q0Z7S8 132 aa12.15□□□□□ -0.46
SQSTM1-210ENST00000506042 PLEKHB2Q96CS7 222 aa12.15□□□□□ -0.46
SQSTM1-210ENST00000506042 MUC2Q02817 5179 aa12.14□□□□□ -0.47
SQSTM1-210ENST00000506042 SCO1O75880 301 aa12.14□□□□□ -0.47
SQSTM1-210ENST00000506042 LCE2AQ5TA79 106 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-210ENST00000506042 M0R378 163 aa12.13□□□□□ -0.47
SQSTM1-210ENST00000506042 TMEM170BQ5T4T1 132 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms