RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 LINC00846Q9NV44 126 aa4.25□□□□□ -1.73
USF3-204ENST00000496826 IGKV1-8A0A0C4DH67 115 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 RPL37AP61513 92 aaKnown RBP4.24□□□□□ -1.73
USF3-204ENST00000496826 A0A087WVE0 104 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 PINLYPA6NC86 204 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 WT1-ASQ06250 92 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 A8MUN3 132 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 C9orf163Q8N9P6 203 aa4.24□□□□□ -1.73
USF3-204ENST00000496826 ARTNQ5T4W7 220 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 SPACA4Q8TDM5 124 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 KIF25-AS1Q9Y6Z4 181 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 DEFB136Q30KP8 78 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 IGHV3OR16-9A0A0B4J2B5 98 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 DEFB116Q30KQ4 102 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 NLRC5Q86WI3 1866 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 LINC00959A0A1B0GUT2 108 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 FSTL3O95633 263 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 XGP55808 180 aa4.23□□□□□ -1.73
USF3-204ENST00000496826 C11orf72Q8NBR9 251 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 KRTAP27-1Q3LI81 207 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 CACNA1AO00555 2505 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 ZFP36P26651 326 aaKnown RBP4.22□□□□□ -1.73
USF3-204ENST00000496826 IGLV2-18A0A075B6J9 118 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 I3L2K1 104 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 M0QY20 66 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 IGLV1-44P01699 117 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 PLXNA3P51805 1871 aa4.22□□□□□ -1.73
USF3-204ENST00000496826 PTPRBP23467 1997 aa4.21□□□□□ -1.73
USF3-204ENST00000496826 MRPS12O15235 138 aaKnown RBP4.21□□□□□ -1.73
USF3-204ENST00000496826 DEFB114Q30KQ6 69 aa4.21□□□□□ -1.73
USF3-204ENST00000496826 CYYR1Q96J86 154 aa4.21□□□□□ -1.73
USF3-204ENST00000496826 PTPN13Q12923 2485 aa4.21□□□□□ -1.73
USF3-204ENST00000496826 M0R2N4 97 aa4.21□□□□□ -1.74
USF3-204ENST00000496826 IGLV5-37A0A075B6J1 123 aa4.21□□□□□ -1.74
USF3-204ENST00000496826 PIP4P1Q86T03 277 aa4.21□□□□□ -1.74
USF3-204ENST00000496826 AMELXQ99217 191 aa4.21□□□□□ -1.74
USF3-204ENST00000496826 KIAA1551Q9HCM1 1747 aa4.2□□□□□ -1.74
USF3-204ENST00000496826 SPATA3Q8NHX4 192 aa4.2□□□□□ -1.74
USF3-204ENST00000496826 IGLV3-1P01715 115 aa4.2□□□□□ -1.74
USF3-204ENST00000496826 Q6ZTI0 123 aa4.2□□□□□ -1.74
USF3-204ENST00000496826 LY75O60449 1722 aa4.2□□□□□ -1.74
USF3-204ENST00000496826 K7EQG2 157 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 SIGLEC1Q9BZZ2 1709 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 Q96NJ1 140 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 RTL8CO15255 209 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 ZNF581Q9P0T4 197 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 DEFB4AO15263 64 aa4.19□□□□□ -1.74
USF3-204ENST00000496826 ADAMTS9Q9P2N4 1935 aa4.18□□□□□ -1.74
USF3-204ENST00000496826 THSD7AQ9UPZ6 1657 aa4.18□□□□□ -1.74
USF3-204ENST00000496826 TM2D3Q9BRN9 247 aa4.18□□□□□ -1.74
USF3-204ENST00000496826 PLA2G2EQ9NZK7 142 aa4.18□□□□□ -1.74
USF3-204ENST00000496826 LINC00205P59089 165 aa4.18□□□□□ -1.74
USF3-204ENST00000496826 ZNF295-AS1Q8N0V1 137 aa4.17□□□□□ -1.74
USF3-204ENST00000496826 PRO0461Q9UI25 63 aa4.17□□□□□ -1.74
USF3-204ENST00000496826 ZNF831Q5JPB2 1677 aa4.17□□□□□ -1.74
USF3-204ENST00000496826 TRBV7-4A0A0J9YYF1 115 aa4.17□□□□□ -1.74
USF3-204ENST00000496826 LINC00167Q96N53 147 aa4.17□□□□□ -1.74
USF3-204ENST00000496826 ADAMTSL1Q8N6G6 1762 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 IGLV2-8P01709 118 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 MAPK1IP1LQ8NDC0 245 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 Q9UF83 564 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 IGLV2-11P01706 119 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 A8MWP4 228 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 C16orf90A8MZG2 172 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 MRPL34Q9BQ48 92 aaKnown RBP4.16□□□□□ -1.74
USF3-204ENST00000496826 NUP210Q8TEM1 1887 aaPredicted RBP4.16□□□□□ -1.74
USF3-204ENST00000496826 FBXL19-AS1Q494R0 122 aa4.16□□□□□ -1.74
USF3-204ENST00000496826 TLX1NBP0CAT3 122 aa4.15□□□□□ -1.74
USF3-204ENST00000496826 SIPA1L3O60292 1781 aaPredicted RBP4.15□□□□□ -1.74
USF3-204ENST00000496826 SEC61BP60468 96 aaKnown RBP4.15□□□□□ -1.74
USF3-204ENST00000496826 GDF5OSQ5U4N7 250 aa4.15□□□□□ -1.74
USF3-204ENST00000496826 SMCR5Q8TEV8 140 aa4.15□□□□□ -1.74
USF3-204ENST00000496826 ITGBL1O95965 494 aaPredicted RBP4.15□□□□□ -1.74
USF3-204ENST00000496826 IGLV8-61A0A075B6I0 122 aa4.15□□□□□ -1.75
USF3-204ENST00000496826 CDC42SE2Q9NRR3 84 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 KIAA1671Q9BY89 1806 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 H3BNG1 76 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 CDSNQ15517 529 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 PLA2G2CQ5R387 149 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 BBC3Q96PG8 261 aaPredicted RBP4.14□□□□□ -1.75
USF3-204ENST00000496826 PSMG3-AS1Q96PY0 264 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 EPG5Q9HCE0 2579 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 COA5Q86WW8 74 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 ITGB4P16144 1822 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 NAV2Q8IVL1 2488 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 LRRK2Q5S007 2527 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 BRWD1-AS2P59051 145 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 LINC00304Q8N9R0 145 aa4.14□□□□□ -1.75
USF3-204ENST00000496826 LOC110117498A0A087WWA1 95 aa4.13□□□□□ -1.75
USF3-204ENST00000496826 SPANXA2-OT1Q8N9U9 137 aa4.13□□□□□ -1.75
USF3-204ENST00000496826 OBSCN-AS1Q96MR7 158 aa4.13□□□□□ -1.75
USF3-204ENST00000496826 NOTCH2Q04721 2471 aa4.13□□□□□ -1.75
USF3-204ENST00000496826 LINC00242Q5T6M2 205 aa4.13□□□□□ -1.75
USF3-204ENST00000496826 SMIM29Q86T20 159 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 ZNF462Q96JM2 2506 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 NRXN2Q9P2S2 1712 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 IGLV5-48A0A075B6I7 105 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 M0R2T5 61 aa4.12□□□□□ -1.75
USF3-204ENST00000496826 SLURP2P0DP57 97 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms